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Updated: Jun 5, 2026

Preparation of Enantiopure Non-Activated Aziridines and Synthesis of Biemamide B, D, and epiallo-Isomuscarine
Published on: June 13, 2022
Methyl 9H-xanthene-9-carboxyl-ate
Pamela M Dean1, Jelena Turanjanin, Douglas R Macfarlane
1School of Chemistry, Monash University, Wellington Road, Clayton, Victoria 3800, Australia.
A novel xanthone derivative was unintentionally synthesized as a byproduct during propantheline bromide recrystallization. Structural analysis revealed a folded xanthone core and specific ester conformation, with layered molecular packing via weak interactions.
Area of Science:
- Organic Chemistry
- Crystallography
- Medicinal Chemistry
Background:
- Propantheline bromide is an anti-muscarinic drug.
- Xanthone derivatives possess diverse biological activities.
- Unintended synthesis can lead to discovery of novel compounds.
Purpose of the Study:
- To characterize the structure of an unintentionally synthesized xanthone derivative.
- To investigate the molecular conformation and packing of the novel compound.
- To understand the crystallization behavior of the byproduct.
Main Methods:
- Single-crystal X-ray diffraction was used for structural determination.
- Analysis of bond lengths, angles, and torsion angles.
- Investigation of intermolecular interactions, including C-H⋯π, π-π stacking, and C-H⋯O interactions.
Main Results:
- The title compound, C(15)H(12)O(3), was identified as a xanthone derivative.
- The xanthone unit exhibited a folded conformation with a dihedral angle of 24.81°.
- The ester substituent adopted a trans staggered conformation (torsion angle 178.4°).
- Molecules formed layered structures through weak C-H⋯π and π-π interactions, along with a C-H⋯O interaction.
Conclusions:
- The study successfully characterized a novel xanthone derivative obtained as a synthetic byproduct.
- The detailed structural analysis provides insights into the conformational preferences and solid-state packing of this xanthone.
- The findings contribute to the understanding of xanthone chemistry and crystallization phenomena.
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