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Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis
Published on: June 27, 2020
Inactivation of the FLCN tumor suppressor gene induces TFE3 transcriptional activity by increasing its nuclear
Seung-Beom Hong1, HyoungBin Oh, Vladimir A Valera
1Urologic Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, United States of America.
Background:
Germline mutations in a tumor suppressor gene FLCN lead to development of fibrofolliculomas, lung cysts and renal cell carcinoma (RCC) in Birt-Hogg-Dubé syndrome. TFE3 is a member of the MiTF/TFE transcription factor family and Xp11.2 translocations found in sporadic RCC involving TFE3 result in gene fusions and overexpression of chimeric fusion proteins that retain the C-terminal DNA binding domain of TFE3. We found that GPNMB expression, which is regulated by MiTF, was greatly elevated in renal cancer cells harboring either TFE3 translocations or FLCN inactivation. Since TFE3 is implicated in RCC, we hypothesized that elevated GPNMB expression was due to increased TFE3 activity resulting from the inactivation of FLCN.
Methodology/Principal Findings:
TFE3 knockdown reduced GPNMB expression in renal cancer cells harboring either TFE3 translocations or FLCN inactivation. Moreover, FLCN knockdown induced GPNMB expression in FLCN-restored renal cancer cells. Conversely, wildtype FLCN suppressed GPNMB expression in FLCN-null cells. FLCN inactivation was correlated with increased TFE3 transcriptional activity accompanied by its nuclear localization as revealed by elevated GPNMB mRNA and protein expression, and predominantly nuclear immunostaining of TFE3 in renal cancer cells, mouse embryo fibroblast cells, mouse kidneys and mouse and human renal tumors. Nuclear localization of TFE3 was associated with TFE3 post-translational modifications including decreased phosphorylation.
Conclusions/Significance:
Increased TFE3 activity is a downstream event induced by FLCN inactivation and is likely to be important for renal tumor development. This study provides an important novel mechanism for induction of TFE3 activity in addition to TFE3 overexpression resulting from Xp11.2 translocations, suggesting that TFE3 may be more broadly involved in tumorigenesis.
Insights
FLCN gene inactivation increases TFE3 activity, promoting renal cell carcinoma (RCC) development. This discovery reveals a new mechanism for TFE3 activation in tumorigenesis beyond gene fusions.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Birt-Hogg-Dubé syndrome is linked to FLCN tumor suppressor gene mutations, causing fibrofolliculomas, lung cysts, and renal cell carcinoma (RCC).
- Xp11.2 translocations in sporadic RCC lead to TFE3 gene fusions and overexpression of chimeric proteins.
- Elevated GPNMB expression, regulated by MiTF, was observed in renal cancer cells with TFE3 translocations or FLCN inactivation.
Purpose of the Study:
- To investigate the hypothesis that elevated GPNMB expression in RCC is caused by increased TFE3 activity due to FLCN inactivation.
- To elucidate the relationship between FLCN, TFE3, and GPNMB expression in renal cancer.
Main Methods:
- TFE3 and FLCN knockdown experiments in renal cancer cells.
- Analysis of GPNMB mRNA and protein expression.
- Immunohistochemical analysis of TFE3 localization and phosphorylation in various cell and tissue types.
- Comparison of TFE3 activity in FLCN-inactivated versus FLCN-restored cells.
Main Results:
- TFE3 knockdown decreased GPNMB expression in cells with TFE3 translocations or FLCN inactivation.
- FLCN knockdown induced GPNMB expression, while wildtype FLCN suppressed it.
- FLCN inactivation correlated with increased TFE3 transcriptional activity, nuclear localization, and elevated GPNMB expression.
- Nuclear TFE3 localization was associated with decreased phosphorylation.
Conclusions:
- Increased TFE3 activity is a downstream consequence of FLCN inactivation and plays a role in renal tumor development.
- This study identifies a novel mechanism for TFE3 activity induction, broadening its potential involvement in tumorigenesis.
- TFE3 may be a more significant factor in cancer development than previously recognized, beyond its role in translocation-driven RCC.
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