Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Assessment of Diffusion and Perfusion01:17

Assessment of Diffusion and Perfusion

Understanding and evaluating diffusion and perfusion is critical in assessing a patient's respiratory and circulatory health. These processes play key roles in maintaining the body's internal environment, ensuring that tissues receive adequate oxygen while waste products are efficiently removed.
The Role of Diffusion in Respiration
Diffusion is the process by which molecules move from an area of higher concentration to an area of lower concentration. In the respiratory system, this principle...
Magnetic Resonance Imaging01:24

Magnetic Resonance Imaging

Magnetic resonance imaging (MRI) is a noninvasive medical imaging technique based on a phenomenon of nuclear physics discovered in the 1930s, in which matter exposed to magnetic fields and radio waves was found to emit radio signals. In 1970, a physician and researcher named Raymond Damadian noticed that malignant (cancerous) tissue gave off different signals than normal body tissue. He applied for a patent for the first MRI scanning device in clinical use by the early 1980s. The early MRI...
Brain Imaging01:14

Brain Imaging

Brain imaging technologies provide critical insights into both the structure and function of the human brain, enabling medical professionals and researchers to diagnose, study, and treat neurological disorders or psychiatric disorders more effectively.
These technologies include computerized axial tomography (CAT or CT scans), positron-emission tomography (PET scans),  magnetic resonance imaging (MRI),  functional magnetic resonance imaging (fMRI), and Transcranial Magnetic Stimulation (TMS).
Diffusion01:12

Diffusion

Diffusion is the passive movement of substances down their concentration gradients—requiring no expenditure of cellular energy. Substances, such as molecules or ions, diffuse from an area of high concentration to an area of low concentration in the cytosol or across membranes. Eventually, the concentration will even out, with the substance moving randomly but causing no net change in concentration. Such a state is called dynamic equilibrium, which is essential for maintaining overall...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Youth Soccer Participation and Brain Health Outcomes in Adolescent Athletes.

JAMA network open·2026
Same author

Microbiome-behavior coupling shapes infant adaptation to early maternal unpredictability.

Frontiers in microbiology·2026
Same author

Intraoperative Evaluation of Semiautomatic Localization of the Facial Nerve Using Diffusion Tensor Imaging in Patients with Large Vestibular Schwannomas: A Pilot Study.

Journal of neurological surgery reports·2026
Same author

Application of artificial intelligence in paediatric oncology imaging.

Pediatric radiology·2026
Same author

The potential of low-field MRI for global dementia care.

Nature reviews. Neurology·2026
Same author

Increased Brain-Age Gap in Young Adults With Psychotic Experiences.

Biological psychiatry global open science·2026
Same journal

Isolation of Mesenchymal Stem Cell-Derived Extracellular Vesicles.

Methods in molecular biology (Clifton, N.J.)·2026
Same journal

Modeling Melanoma Immune Surveillance by CAR-T Cells in Human Skin Organoids.

Methods in molecular biology (Clifton, N.J.)·2026
Same journal

Stepwise Optimization of a Matrigel-Based In Vitro Angiogenesis Assay for Reproducible and Quantifiable 2D-Tube Formation Using HUVECs.

Methods in molecular biology (Clifton, N.J.)·2026
Same journal

Quantifying Mechanical Properties of Fresh Ovarian Tissue with Optical Brillouin Microscopy.

Methods in molecular biology (Clifton, N.J.)·2026
Same journal

3D Chromatin Architecture During Early Development: New Methods and New Findings.

Methods in molecular biology (Clifton, N.J.)·2026
Same journal

Metabolic Plasticity in Embryogenesis Throughout the Lens of NAD<sup></sup>.

Methods in molecular biology (Clifton, N.J.)·2026
See all related articles

Related Experiment Video

Updated: Jun 4, 2026

Diffusion Tensor Magnetic Resonance Imaging in the Analysis of Neurodegenerative Diseases
09:33

Diffusion Tensor Magnetic Resonance Imaging in the Analysis of Neurodegenerative Diseases

Published on: July 28, 2013

Diffusion tensor imaging.

Derek K Jones1, Alexander Leemans

  • 1School of Psychology, Cardiff University Brain Research Imaging Centre, Cardiff University, Cardiff, UK. Jonesd27@cf.ac.uk

Methods in Molecular Biology (Clifton, N.J.)
|February 1, 2011
PubMed
Summary
This summary is machine-generated.

This article provides a comprehensive guide for using Diffusion tensor MRI to map the microscopic structure of living tissues. It details every stage of the process, from initial scanner setup to final statistical analysis, helping researchers adapt these techniques for their own specific equipment and time requirements.

Keywords:
MRI protocolmicrostructural organizationtissue anisotropyneuroimaging techniques

Frequently Asked Questions

More Related Videos

Tracking the Mammary Architectural Features and Detecting Breast Cancer with Magnetic Resonance Diffusion Tensor Imaging
15:48

Tracking the Mammary Architectural Features and Detecting Breast Cancer with Magnetic Resonance Diffusion Tensor Imaging

Published on: December 15, 2014

Co-analysis of Brain Structure and Function using fMRI and Diffusion-weighted Imaging
17:06

Co-analysis of Brain Structure and Function using fMRI and Diffusion-weighted Imaging

Published on: November 8, 2012

Related Experiment Videos

Last Updated: Jun 4, 2026

Diffusion Tensor Magnetic Resonance Imaging in the Analysis of Neurodegenerative Diseases
09:33

Diffusion Tensor Magnetic Resonance Imaging in the Analysis of Neurodegenerative Diseases

Published on: July 28, 2013

Tracking the Mammary Architectural Features and Detecting Breast Cancer with Magnetic Resonance Diffusion Tensor Imaging
15:48

Tracking the Mammary Architectural Features and Detecting Breast Cancer with Magnetic Resonance Diffusion Tensor Imaging

Published on: December 15, 2014

Co-analysis of Brain Structure and Function using fMRI and Diffusion-weighted Imaging
17:06

Co-analysis of Brain Structure and Function using fMRI and Diffusion-weighted Imaging

Published on: November 8, 2012

Area of Science:

  • Neuroimaging and Diffusion tensor imaging within medical physics
  • Biomedical engineering and diagnostic radiology

Background:

No prior work had fully resolved the optimal workflow for non-invasive characterization of living tissue microstructure. Researchers often struggle to balance acquisition speed with the high resolution required for accurate parametric mapping. Prior research has shown that standard imaging techniques frequently fail to capture the complex orientation of fibers within biological samples. This gap motivated the development of standardized protocols to ensure consistency across different clinical settings. It was already known that tissue anisotropy provides valuable insights into health and disease states. However, the lack of a unified approach hindered widespread adoption of these advanced diagnostic tools. That uncertainty drove the need for a robust framework that accounts for various hardware limitations. This paper addresses these challenges by presenting a validated, end-to-end methodology for generating reliable tissue maps.

Purpose Of The Study:

The aim of this work is to present a comprehensive, validated protocol for performing non-invasive microstructural characterization of living tissue. Researchers often face challenges when attempting to standardize imaging workflows across different clinical environments. This study addresses the specific problem of variability in data acquisition and processing steps that can compromise final results. The authors seek to provide a clear, step-by-step guide that covers the entire pipeline from scanner setup to statistical entry. By sharing their successful experience with a large subject group, they intend to offer a reliable template for the scientific community. The motivation for this effort is to enable other laboratories to implement these complex techniques with greater confidence. They emphasize the importance of justifying each parameter choice to allow for necessary modifications based on local hardware. This initiative aims to bridge the gap between theoretical imaging capabilities and practical, high-throughput research applications.

Main Methods:

The review approach focuses on a systematic, end-to-end pipeline for processing magnetic resonance data. Investigators first determine the most effective settings for scanner acquisition to maximize signal quality. Following collection, the team performs rigorous pre-processing to remove artifacts and noise from the raw inputs. They then apply mathematical models to estimate the underlying structural properties of the scanned regions. This design ensures that all intermediate steps are documented for reproducibility and future modification. The authors leverage their experience with hundreds of participants to refine each stage of the workflow. They provide detailed justifications for every technical decision to assist users with varying hardware configurations. This structured strategy allows for the generation of accurate maps suitable for complex statistical evaluation.

Main Results:

Key findings from the literature highlight the efficacy of a standardized workflow applied to a cohort exceeding 400 individuals. The authors demonstrate that their approach successfully produces consistent parametric maps across diverse subjects. These maps effectively capture essential metrics including mean diffusivity and tissue anisotropy. The results indicate that the model fitting process is robust when paired with the described pre-processing techniques. By optimizing acquisition parameters, the team achieved high-quality visualizations of dominant fiber orientation. The study confirms that the protocol remains functional even when adapted to specific time-based constraints. These findings suggest that the methodology is highly reliable for characterizing microstructural organization in living systems. The data support the utility of this comprehensive framework for large-scale clinical research projects.

Conclusions:

The authors propose that their standardized workflow offers a reliable template for diverse research environments. Synthesis and implications suggest that adapting acquisition parameters allows for flexibility without compromising the integrity of the resulting parametric maps. Researchers may modify the described steps to align with specific time constraints or hardware capabilities. The study demonstrates that successful implementation is achievable across large cohorts, as evidenced by their extensive testing. This approach facilitates consistent evaluation of mean diffusivity and dominant fiber orientation in clinical populations. By providing detailed justifications for each technical choice, the authors enable broader application of these imaging techniques. The findings imply that careful pre-processing is as vital as the initial data collection phase. Ultimately, this protocol serves as a practical resource for those seeking to enhance the quality of their neuroimaging outputs.

The researchers propose that the protocol enables non-invasive characterization of tissue microstructure by generating parametric maps. These maps specifically visualize mean diffusivity, tissue anisotropy, and dominant fiber orientation, which are critical for understanding biological organization in vivo.

The authors utilize Diffusion tensor MRI, a specialized technique that allows for the assessment of microstructural organization. This tool is distinct from conventional imaging because it provides specific information about fiber orientation and tissue integrity that other methods cannot capture.

The researchers emphasize that selecting optimal acquisition parameters on the scanner is necessary to ensure high-quality data. This step is required because hardware constraints vary significantly between laboratories, necessitating adjustments to maintain signal fidelity during the initial collection phase.

The authors employ a comprehensive data pipeline that includes pre-processing and model fitting. This role is vital for transforming raw scanner signals into interpretable parametric maps that can be entered into subsequent statistical analysis packages.

The study reports successful application of this protocol across a cohort of over 400 subjects. This measurement demonstrates the robustness and scalability of the workflow when applied in a real-world laboratory setting.

The researchers propose that the provided justifications in the notes section allow readers to adapt the protocol to their own constraints. This implication suggests that the method is not rigid but rather a flexible framework for future neuroimaging studies.