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Related Concept Videos

The DNA Replication Fork01:02

The DNA Replication Fork

An organism’s genome needs to be duplicated in an efficient and error-free manner for its growth and survival. The replication fork is a Y-shaped active region where two strands of DNA are separated and replicated continuously. The coupling of DNA unzipping and complementary strand synthesis is a characteristic feature of a replication fork.   Organisms with small circular DNA, such as E. coli, often have a single origin of replication; therefore, they have only two replication forks, one in...
The DNA Replication Fork01:02

The DNA Replication Fork

An organism’s genome needs to be duplicated in an efficient and error-free manner for its growth and survival. The replication fork is a Y-shaped active region where two strands of DNA are separated and replicated continuously. The coupling of DNA unzipping and complementary strand synthesis is a characteristic feature of a replication fork.   Organisms with small circular DNA, such as E. coli, often have a single origin of replication; therefore, they have only two replication forks, one in...
Restarting Stalled Replication Forks02:37

Restarting Stalled Replication Forks

DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart, a...
Restarting Stalled Replication Forks02:37

Restarting Stalled Replication Forks

DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart, a...
Homologous Recombination02:31

Homologous Recombination

The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
Genome Copying Errors02:46

Genome Copying Errors

DNA replication is a well-evolved process that copies millions of base pairs with high fidelity during each cell division. Occasionally a wrong base or a long stretch of wrong bases may get added to the daughter strands. If the errors are left unchecked, cells might accumulate several mutations that might endanger their  survival. Therefore, the copying errors are checked and repaired at three levels.

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Related Experiment Video

Updated: Jun 4, 2026

Direct Restart of a Replication Fork Stalled by a Head-On RNA Polymerase
07:27

Direct Restart of a Replication Fork Stalled by a Head-On RNA Polymerase

Published on: April 29, 2010

Break-induced replication is highly inaccurate.

Angela Deem1, Andrea Keszthelyi, Tiffany Blackgrove

  • 1Department of Biology, School of Science, IUPUI, Indianapolis, Indiana, United States of America.

Plos Biology
|February 25, 2011
PubMed
Summary
This summary is machine-generated.

Break-induced replication (BIR) is an error-prone DNA synthesis process. Our study shows BIR causes high rates of mutations, potentially contributing to cancer and evolution.

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Inducing a Site Specific Replication Blockage in E. coli Using a Fluorescent Repressor Operator System
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Inducing a Site Specific Replication Blockage in E. coli Using a Fluorescent Repressor Operator System

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Visualization of UV-induced Replication Intermediates in E. coli using Two-dimensional Agarose-gel Analysis
10:36

Visualization of UV-induced Replication Intermediates in E. coli using Two-dimensional Agarose-gel Analysis

Published on: December 21, 2010

Related Experiment Videos

Last Updated: Jun 4, 2026

Direct Restart of a Replication Fork Stalled by a Head-On RNA Polymerase
07:27

Direct Restart of a Replication Fork Stalled by a Head-On RNA Polymerase

Published on: April 29, 2010

Inducing a Site Specific Replication Blockage in E. coli Using a Fluorescent Repressor Operator System
11:19

Inducing a Site Specific Replication Blockage in E. coli Using a Fluorescent Repressor Operator System

Published on: August 21, 2016

Visualization of UV-induced Replication Intermediates in E. coli using Two-dimensional Agarose-gel Analysis
10:36

Visualization of UV-induced Replication Intermediates in E. coli using Two-dimensional Agarose-gel Analysis

Published on: December 21, 2010

Area of Science:

  • Molecular Biology
  • Genetics
  • DNA Repair

Background:

  • DNA synthesis is crucial for genome duplication and repair.
  • While DNA replication is accurate, DNA repair synthesis can be error-prone.
  • Break-induced replication (BIR) is a process mimicking replication but initiated at double-strand breaks (DSBs).

Purpose of the Study:

  • To quantify mutagenesis associated with BIR in Saccharomyces cerevisiae.
  • To investigate the factors contributing to BIR-related inaccuracies.
  • To understand the implications of BIR mutagenesis in cellular processes.

Main Methods:

  • Utilized frameshift reporter systems to measure mutagenesis during BIR.
  • Assessed mutation rates at varying distances from the DSB.
  • Investigated the roles of polymerase proofreading, mismatch repair, and dNTP levels.

Main Results:

  • BIR DNA synthesis is intrinsically inaccurate, with frameshift mutation rates up to 2,800-fold higher than normal replication.
  • High mutagenesis rates were observed both near and far from the DSB.
  • Elevated dNTP levels contributed to BIR-related mutagenesis.
  • Polymerase proofreading and mismatch repair partially corrected BIR errors, with Pol δ identified as a major error generator.

Conclusions:

  • High levels of DNA polymerase errors, inadequately corrected, drive mutagenesis during BIR.
  • BIR activation in eukaryotes may significantly contribute to mutation accumulation, impacting cancer and evolution.
  • Understanding BIR's mutagenic potential is crucial for comprehending genome instability and evolutionary processes.