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mRNA Interactome Capture from Plant Protoplasts
Published on: July 28, 2017
Pumilio Puf domain RNA-binding proteins in Arabidopsis
Nazia Abbasi1, Youn-Il Park, Sang-Bong Choi
1School of Biotechnology and Environmental Engineering, Myongji University, Yongin, South Korea.
Abstract:
Pumilio proteins are a class of RNA-binding proteins harboring Puf domains (or PUM-HD; Pumilio-Homology Domain), named after the founding members, Pumilio (from Drosophila melanogaster) and FBF (Fem-3 mRNA-Binding Factor from Caenorhabditis elegans). The domains contain multiple tandem repeats each of which recognizes one RNA base and is comprised of 35-39 amino acids. Puf domain proteins have been reported in organisms ranging from single-celled yeast to higher multicellular eukaryotes, such as humans and plants. In yeast and animals, they are involved in a variety of posttranscriptional RNA metabolism including RNA decay, RNA transport, rRNA processing and translational repression. However, their roles in plants are largely unknown. Recently, we have characterized the first member of the Puf family of RNA-binding proteins, APUM23, in Arabidopsis. Here, we discuss and summarize the diverse roles and targets of Puf proteins previously reported in other organisms and then highlight the potential regulatory roles of Puf proteins in Arabidopsis, using our recent study as an example.
Insights
Pumilio proteins regulate RNA metabolism in many organisms. This study characterizes APUM23 in Arabidopsis, highlighting potential roles for these RNA-binding proteins in plant gene regulation.
Area of Science:
- Molecular Biology
- Plant Science
- Genetics
Background:
- Pumilio proteins, characterized by Puf domains (PUM-HD), are crucial RNA-binding proteins.
- They regulate diverse posttranscriptional RNA processes like decay, transport, and translation in yeast and animals.
- Their functions in plants remain largely unexplored.
Purpose of the Study:
- To characterize the first Puf family member, APUM23, in Arabidopsis thaliana.
- To summarize known roles of Puf proteins in other eukaryotes.
- To highlight potential regulatory functions of Puf proteins in plants.
Main Methods:
- Literature review of Puf protein functions across diverse organisms.
- Characterization of APUM23 in Arabidopsis (specific methods not detailed in abstract).
- Comparative analysis of Puf protein roles.
Main Results:
- Pumilio proteins are conserved across eukaryotes, binding RNA via Puf domains.
- APUM23 identified as the first characterized Puf protein in Arabidopsis.
- This study sets the stage for understanding Puf protein roles in plants.
Conclusions:
- Pumilio proteins play significant roles in RNA metabolism and gene regulation.
- Further research into APUM23 and other plant Puf proteins is warranted.
- Understanding plant Puf proteins can reveal novel regulatory mechanisms in Arabidopsis.
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