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Whole Genome Sequencing for Rapid Characterization of Rabies Virus Using Nanopore Technology
Published on: August 18, 2023
Molecular characterization of Korean rabies virus isolates
Dong-Kun Yang1, Young-Nam Park, Gyeong-Soo Hong
1National Veterinary Research and Quarantine Service, Anyang 430-824, Korea. yangdk@nvrqs.go.kr
Journal of Veterinary Science
|March 4, 2011
Summary
Korean rabies virus (RABV) isolates from 2008-2009, primarily from raccoon dogs, belong to Lyssavirus genotype I. Phylogenetic analysis suggests a Northeastern Asian origin, with potential pathogenicity in various hosts.
Area of Science:
- Virology
- Molecular Biology
- Genetics
Background:
- Rabies remains a significant public health concern globally.
- Understanding the genetic diversity and origin of rabies virus (RABV) is crucial for effective control strategies.
- Previous studies have characterized RABV in various regions, but specific data on Korean isolates is limited.
Purpose of the Study:
- To perform molecular and phylogenetic analyses of Korean rabies virus (RABV) isolates.
- To determine the genetic relationships and origins of these isolates.
- To assess potential implications for pathogenicity and host range.
Main Methods:
- Nucleotide sequencing of the nucleoprotein (N) and glycoprotein (G) genes from 11 Korean RABV isolates (2008-2009).
- Molecular and phylogenetic analyses to determine genetic similarities and relationships.
- Comparison with international RABV strains.
Main Results:
- Korean RABV isolates showed high nucleotide sequence similarity (N gene: 98.1-99.8%; G gene: 97.9-99.3%).
- All isolates were confirmed as Lyssavirus genotype I and classified into four distinct subgroups.
- Phylogenetic analysis indicated a close relationship to strains from Eastern China and Russia, suggesting a Northeastern Asian origin.
Conclusions:
- The Korean RABV isolates likely originated from rabid raccoon dogs in Northeastern Asia.
- The circulating RABV strains in Korea belong to Lyssavirus genotype I.
- Absence of substitutions at key antigenic sites suggests potential pathogenicity across multiple hosts.

