Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Protein Organization01:24

Protein Organization

Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular transport, catalysis, and structural support. Proteins have a hierarchical structure comprising at least three levels of organization: primary, secondary, and tertiary structure. Some large proteins have a quaternary structure where individual protein subunits are linked together.
The primary structure of a protein is its amino acid sequence.
RNA Structure01:23

RNA Structure

Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
Chromosome Structure02:40

Chromosome Structure

A functional eukaryotic chromosome must contain three elements: a centromere, telomeres, and numerous origins of replication.
The centromere is a DNA sequence that links sister chromatids. This is also where kinetochores, protein complexes to which spindle microtubules attach, are constructed after the chromosome is replicated. The kinetochores allow the spindle microtubules to move the chromosomes within the cell during cell division.
Telomeres consist of non-coding repetitive nucleotide...
Intrinsically Disordered Proteins02:18

Intrinsically Disordered Proteins

Intrinsically disordered proteins are a group of proteins that do not fold into specific three-dimensional structures. Their structural flexibility allows them to complement ordered proteins to perform functions that are inaccessible to rigid structures. They are more common in eukaryotes than prokaryotes and may either be exclusively intrinsically disordered or hybrid proteins, consisting of a mix of ordered and disordered regions. The absence of a rigid structure in these proteins can be...
Intrinsically Disordered Proteins02:18

Intrinsically Disordered Proteins

Intrinsically disordered proteins are a group of proteins that do not fold into specific three-dimensional structures. Their structural flexibility allows them to complement ordered proteins to perform functions that are inaccessible to rigid structures. They are more common in eukaryotes than prokaryotes and may either be exclusively intrinsically disordered or hybrid proteins, consisting of a mix of ordered and disordered regions. The absence of a rigid structure in these proteins can be...
Random Sampling Method01:09

Random Sampling Method

Sampling is a technique to select a portion (or subset) of the larger population and study that portion (the sample) to gain information about the population. Data are the result of sampling from a population. The sampling method ensures that samples are drawn without bias and accurately represent the population. Because measuring the entire population in a study is not practical, researchers use samples to represent the population of interest. Among the various sampling methods used by...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Hydrogen Vacancy Induced Superconductivity Collapse in A15 Lanthanum Hydride.

Physical review letters·2026
Same author

Erratum: "Developments and further applications of ephemeral data derived potentials" [J. Chem. Phys. 159, 144801 (2023)].

The Journal of chemical physics·2025
Same author

Author Correction: The first-principles phase diagram of monolayer nanoconfined water.

Nature·2025
Same author

Fast crystallographic texture mapping of atomically thin hBN films on Ni(111) using secondary electron contrast.

Nanoscale advances·2025
Same author

Prediction of novel gallium-sulfur compositions under pressure.

Physical chemistry chemical physics : PCCP·2025
Same author

Machine Learning simulations reveal oxygen's phase diagram and thermal properties at conditions relevant to white dwarfs.

Nature communications·2025
Same journal

Modeling thermal transport in AlN/GaN superlattices and heterostructures with machine-learned force fields.

Journal of physics. Condensed matter : an Institute of Physics journal·2026
Same journal

Interband transition orbit probed in de Haas-van Alphen oscillations in the (double) Dirac semimetal NbTe<sub>4</sub>.

Journal of physics. Condensed matter : an Institute of Physics journal·2026
Same journal

Highly coarse-grained polarisable water models for mesoscopic simulations.

Journal of physics. Condensed matter : an Institute of Physics journal·2026
Same journal

Ultrafast carrier dynamics in high-density photo-doped MoS<sub>2</sub>: monolayer vs multilayer.

Journal of physics. Condensed matter : an Institute of Physics journal·2026
Same journal

Correlation-driven d-wave superconducting dome from pseudogap spectral reconstruction.

Journal of physics. Condensed matter : an Institute of Physics journal·2026
Same journal

Chiral phonon-mediated superconductivity in alkali-doped fullerides: A unified framework connecting molecular superconductors to two-dimensional chiral superconductivity.

Journal of physics. Condensed matter : an Institute of Physics journal·2026
See all related articles

Related Experiment Video

Updated: Jun 3, 2026

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
10:34

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

Published on: December 9, 2022

Ab initio random structure searching.

Chris J Pickard1, R J Needs

  • 1Department of Physics and Astronomy, University College London, London WC1E 6BT, UK.

Journal of Physics. Condensed Matter : an Institute of Physics Journal
|March 17, 2011
PubMed
Summary
This summary is machine-generated.

This study introduces ab initio random structure searching (AIRSS), a powerful method for discovering stable material structures using density-functional theory (DFT). AIRSS efficiently predicts atomic arrangements to understand material properties.

More Related Videos

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
12:11

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry

Published on: April 8, 2020

Derivatization of Protein Crystals with I3C using Random Microseed Matrix Screening
14:04

Derivatization of Protein Crystals with I3C using Random Microseed Matrix Screening

Published on: January 16, 2021

Related Experiment Videos

Last Updated: Jun 3, 2026

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
10:34

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

Published on: December 9, 2022

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
12:11

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry

Published on: April 8, 2020

Derivatization of Protein Crystals with I3C using Random Microseed Matrix Screening
14:04

Derivatization of Protein Crystals with I3C using Random Microseed Matrix Screening

Published on: January 16, 2021

Area of Science:

  • Materials Science
  • Computational Chemistry
  • Solid-State Physics

Background:

  • Understanding atomic arrangement is crucial for predicting material properties.
  • First-principles electronic structure methods, like density-functional theory (DFT), are increasingly used for materials structure prediction.
  • A need exists for efficient and robust methods to search for stable material structures.

Purpose of the Study:

  • To present a novel, powerful, and simple approach for searching material structures using DFT.
  • To introduce the ab initio random structure searching (AIRSS) methodology.
  • To demonstrate the broad applicability of AIRSS across various material systems.

Main Methods:

  • Utilizing density-functional theory (DFT) as the underlying electronic structure method.
  • Implementing an ab initio random structure searching (AIRSS) algorithm.
  • Applying AIRSS to diverse systems including solids, point defects, surfaces, and clusters.

Main Results:

  • AIRSS has been successfully applied to discover stable structures in various material systems.
  • New structural findings are presented for iron clusters on graphene, silicon clusters, polymeric nitrogen, hydrogen-rich lithium hydrides, and boron.
  • The method proves effective for exploring complex structural landscapes.

Conclusions:

  • Ab initio random structure searching (AIRSS) is an effective and versatile tool for materials discovery.
  • The AIRSS approach facilitates the understanding of material properties through accurate structure prediction.
  • This methodology advances the field of computational materials science.