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Updated: Mar 31, 2026

Generation of a RIP1 Knockout U937 Cell Line Using the CRISPR-Cas9 System
Published on: April 11, 2025
NEMO and RIP1 control cell fate in response to extensive DNA damage via TNF-α feedforward signaling
1Department of Molecular Oncology, Genentech, 1 DNA Way, South San Francisco, CA 94080, USA.
Abstract:
Upon DNA damage, ataxia telangiectasia mutated (ATM) kinase triggers multiple events to promote cell survival and facilitate repair. If damage is excessive, ATM stimulates cytokine secretion to alert neighboring cells and apoptosis to eliminate the afflicted cell. ATM augments cell survival by activating nuclear factor (NF)-κB; however, how ATM induces cytokine production and apoptosis remains elusive. Here we uncover a p53-independent mechanism that transmits ATM-driven cytokine and caspase signals upon strong genotoxic damage. Extensive DNA lesions stimulated two sequential NF-κB activation phases, requiring ATM and NEMO/IKK-γ: The first phase induced TNF-α-TNFR1 feedforward signaling, promoting the second phase and driving RIP1 phosphorylation. In turn, RIP1 kinase triggered JNK3/MAPK10-dependent interleukin-8 secretion and FADD-mediated proapoptotic caspase-8 activation. Thus, in the context of excessive DNA damage, ATM employs NEMO and RIP1 kinase through autocrine TNF-α signaling to switch on cytokine production and caspase activation. These results shed light on cell-fate regulation by ATM.
Insights
Ataxia telangiectasia mutated (ATM) kinase signals cytokine release and apoptosis after DNA damage. This study reveals a p53-independent pathway involving NF-κB and RIP1 kinase, crucial for cell fate decisions.
Area of Science:
- Cellular biology
- Molecular mechanisms of DNA damage response
Background:
- DNA damage triggers cellular responses mediated by ataxia telangiectasia mutated (ATM) kinase.
- ATM promotes cell survival via NF-κB but its role in cytokine production and apoptosis is unclear.
- Existing knowledge gaps regarding ATM's signaling pathways in response to genotoxic stress.
Purpose of the Study:
- To elucidate the p53-independent mechanism by which ATM induces cytokine secretion and apoptosis following extensive DNA damage.
- To identify the key signaling molecules and pathways involved in ATM-mediated cell fate determination.
Main Methods:
- Investigated DNA damage response pathways using cell models.
- Analyzed sequential NF-κB activation phases dependent on ATM and NEMO/IKK-γ.
- Examined the roles of TNF-α-TNFR1 signaling, RIP1 kinase, JNK3/MAPK10, and FADD in downstream signaling.
Main Results:
- Discovered two sequential NF-κB activation phases upon extensive DNA lesions, dependent on ATM and NEMO/IKK-γ.
- Identified TNF-α-TNFR1 feedforward signaling that promotes RIP1 phosphorylation.
- Demonstrated RIP1 kinase-mediated interleukin-8 secretion and caspase-8 activation via JNK3/MAPK10 and FADD, respectively.
Conclusions:
- ATM utilizes NEMO and RIP1 kinase through autocrine TNF-α signaling to activate cytokine production and apoptosis in response to excessive DNA damage.
- This p53-independent pathway provides critical insights into cell fate regulation following genotoxic stress.
- The findings highlight a novel mechanism controlling cellular decisions between survival and elimination.
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