Related Experiment Video
Updated: Jun 3, 2026

Evaluation of a Universal Nested Reverse Transcription Polymerase Chain Reaction for the Detection of Lyssaviruses
Published on: May 2, 2019
[Genetic characterization of wild-type mumps virus isolated in Liaoning Province]
1Liaoning Provincial Center for Disease Control and Prevention, Shenyang 110005, China. dawangyan@lncdc.com
Abstract:
Three mumps virus strains were isolated using Vero/Slam cell line from the patients' throat swabs and urines during mumps outbreaks and sporadic period in Liaoning province from 2008. Fragments of 1028 nucleotides including SH genes from 3 mumps virus isolates were amplified by RT-PCR, the PCR products were ligated into pMD19-T vector and cloned to JM109 cell. By blue-white selection, the positive white clones were sequenced and analyzed. Based on the 316 nucleotides of SH gene, the phylogenetic analyses were processed with WHO mumps reference strains downloaded from GenBank and 3 mumps viruses strains. It wan shown that the 3 mumps virus strains isolated in 2008 belonged to F genotype, 3 strains (LN-2008-001-06, LN-2008-001-07 and LN-2008-001-10) showed a nucleotide and amino acid similarity of 98.7%-100% and 94.7%-100% respectively. Two strains (LN-2008-001-06 and LN-2008-001-10) had the same sequence completely. Comparing to the F reference strains, the 3 mumps virus strains' nucleotide and amino acid similarity of 92.4%-96.2% and 84.2%-94.7% respectively. Due to the limited strain numbers, whether the F genotype was the predominant circulating genotype can not be determined. The surveillance on the mumps virus in Liaoning should be therefore strengthened.
Insights
Three mumps virus strains isolated in Liaoning province in 2008 belong to the F genotype. Further surveillance is recommended to determine if genotype F is the predominant circulating mumps virus strain.
Area of Science:
- Virology
- Molecular Biology
- Genetics
Context:
- Mumps virus outbreaks occurred in Liaoning province in 2008.
- Mumps virus surveillance is crucial for public health.
- Understanding circulating genotypes aids in vaccine development and control strategies.
Purpose:
- To isolate and genetically characterize mumps virus strains from Liaoning province.
- To determine the genotype of mumps virus strains circulating in 2008.
- To assess the potential predominance of genotype F.
Summary:
- Three mumps virus strains were isolated from throat swabs and urine samples.
- Reverse transcription-polymerase chain reaction (RT-PCR) and sequencing were used to analyze the SH gene.
- Phylogenetic analysis revealed that all three strains belong to genotype F, with high nucleotide and amino acid similarity among themselves and to reference strains.
Impact:
- The study identified genotype F mumps virus strains circulating in Liaoning in 2008.
- Findings suggest genotype F may be a significant circulating strain.
- Highlights the need for enhanced mumps virus surveillance in the region to confirm genotype predominance and inform public health interventions.
Related Concept Videos
Single Nucleotide Polymorphisms-SNPs
Poliomyelitis
