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Updated: Jun 2, 2026

Generating CRISPR/Cas9 Mediated Monoallelic Deletions to Study Enhancer Function in Mouse Embryonic Stem Cells
Published on: April 2, 2016
Generation of mice with a novel conditional null allele of the Sox9 gene
Sook Peng Yap1, Xing Xing, Petra Kraus
1Stem Cell and Developmental Biology, Genome Institute of Singapore, 60 Biopolis Street, Singapore. yaps@gis.a-star.edu.sg
Abstract:
Sox9 is expressed in multiple tissues during mouse development and adulthood. Mutations in the Sox9 gene or changes in expression levels can be attributed to many congenital diseases. Heterozygous loss-of-function mutations in the human SOX9 gene cause Campomelic dysplasia, a semi-lethal skeletal malformation syndrome. Disruption of Sox9 by conventional gene targeting leads to perinatal lethality in heterozygous mice, hence hampering the feasibility to obtain the homozygous Sox9 null mice for in vivo functional studies. In this study, we generated a conditional allele of Sox9 (Sox9 ( tm4.Tlu )) by flanking exon 1 with loxP sites. Homozygous mice for the Sox9 ( tm4.Tlu ) allele (Sox9 ( flox/flox )) are viable, fertile and indistinguishable from wildtype (WT) mice, indicating that the Sox9 ( tm4.Tlu ) allele is a fully functional Sox9 allele. Furthermore, we demonstrated that Cre-mediated recombination using a Col2a1-Cre line resulted in specific ablation of Sox9 activity in cartilage tissues.
Insights
Researchers created a conditional Sox9 allele (Sox9 flox/flox) enabling viable homozygous mice. This tool allows specific Sox9 gene ablation in cartilage, aiding studies on congenital diseases like Campomelic dysplasia.
Area of Science:
- Developmental Biology
- Genetics
- Molecular Biology
Background:
- Sox9 is crucial for development and its mutations cause congenital diseases like Campomelic dysplasia.
- Conventional Sox9 gene targeting in mice results in perinatal lethality, preventing homozygous null studies.
Purpose of the Study:
- To generate a conditional Sox9 allele for in vivo functional studies.
- To enable the study of Sox9 function in specific tissues, particularly cartilage.
Main Methods:
- Generated a conditional Sox9 allele (Sox9 tm4.Tlu) by flanking exon 1 with loxP sites.
- Utilized Cre-mediated recombination with a Col2a1-Cre mouse line to achieve tissue-specific gene ablation.
Main Results:
- Homozygous Sox9 (flox/flox) mice are viable, fertile, and phenotypically normal, confirming the allele's functionality.
- Cre-mediated recombination specifically ablated Sox9 activity in cartilage tissues.
Conclusions:
- The conditional Sox9 (flox/flox) allele provides a valuable tool for studying Sox9 function in vivo.
- This approach facilitates research into the role of Sox9 in skeletal development and related congenital disorders.
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