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Preparation and In Vivo Use of an Activity-based Probe for N-acylethanolamine Acid Amidase
Published on: November 23, 2016
Methyl 2-(1H-indole-3-carboxamido)-acetate
Fang Hu1, Le Zheng, Xiang Chao Zeng
1Department of Chemistry, Jinan University, Guangzhou, Guangdong 510632, People's Republic of China.
Researchers synthesized a novel compound, C(12)H(12)N(2)O(3), via chemical condensation. Crystal analysis revealed extensive intermolecular hydrogen bonding forming a 3D network, with a near-planar indole core.
Area of Science:
- Organic Chemistry
- Crystallography
- Supramolecular Chemistry
Background:
- Indole derivatives are important scaffolds in medicinal chemistry and materials science.
- Understanding intermolecular interactions is crucial for designing crystalline materials with desired properties.
Purpose of the Study:
- To synthesize and characterize a novel indole-based compound.
- To investigate the crystal structure and intermolecular interactions of the synthesized compound.
Main Methods:
- Chemical synthesis via condensation of methyl amino-acetate and 3-trichloro-acetyl-indole.
- Single-crystal X-ray diffraction analysis to determine molecular and crystal structure.
- Analysis of hydrogen bonding networks and molecular planarity.
Main Results:
- Successful synthesis of the title compound, C(12)H(12)N(2)O(3).
- Crystal structure reveals molecules linked into chains by N-H⋯O hydrogen bonds along the b axis.
- Chains form a three-dimensional network through additional N-H⋯O hydrogen bonds involving the indole nitrogen.
- The indole skeleton exhibits near planarity, with the amido group twisted by 17.2°.
Conclusions:
- The study presents a new indole derivative with a defined crystal structure.
- Intermolecular hydrogen bonding plays a significant role in organizing the molecules in the solid state.
- The structural data provides insights into the conformational preferences of the indole moiety in this compound.
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