Related Experiment Video
Updated: Jun 1, 2026

Combined Immunofluorescence and DNA FISH on 3D-preserved Interphase Nuclei to Study Changes in 3D Nuclear Organization
Published on: February 3, 2013
ldne: a program for estimating effective population size from data on linkage disequilibrium
1Northwest Fisheries Science Center, 2725 Montlake Blvd. East, Seattle, WA 98112, USA.
Abstract:
ldne is a program with a Visual Basic interface that implements a recently developed bias correction for estimates of effective population size (N(e) ) based on linkage disequilibrium data. The program reads genotypic data in standard formats and can accommodate an arbitrary number of samples, individuals, loci, and alleles, as well as two mating systems: random and lifetime monogamy. ldne calculates separate estimates using different criteria for excluding rare alleles, which facilitates evaluation of data for highly polymorphic markers such as microsatellites. The program also introduces a jackknife method for obtaining confidence intervals that appears to perform better than parametric methods currently in use.
Related Concept Videos
Hardy-Weinberg Principle
Analysis of Population Pharmacokinetic Data
What is Population Genetics?
Distributions to Estimate Population Parameter
Estimating Population Standard Deviation
Mutation, Gene Flow, and Genetic Drift