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Updated: Jun 1, 2026

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
Published on: July 16, 2017
Puzzle of protein dynamical transition
Salvatore Magazù1, Federica Migliardo, Antonio Benedetto
1Dipartimento di Fisica, Università di Messina, Viale Ferdinando Stagno D'Alcontres n° 31, P.O. Box 55, Vill. S. Agata 98166 Messina, Italy. smagazu@unime.it
The dynamical transition observed in biological macromolecules like lysozyme is an artifact of instrumental energy resolution, not a true change in system dynamics. This finding resolves contradictions regarding temperature-dependent behavior in macromolecular motion.
Area of Science:
- Biophysics
- Materials Science
- Neutron Scattering
Background:
- The dynamics of biological macromolecules are not fully understood, with conflicting models for temperature-dependent mean square displacement (MSD) and relaxation time (τ).
- Previous studies proposed explanations like the fragile-to-strong dynamical crossover (FSC) or instrumental resolution effects for observed transitions.
Purpose of the Study:
- To investigate the nature of the dynamical transition in biological systems, specifically dry and hydrated lysozyme.
- To resolve contradictions in existing models concerning the temperature dependence of macromolecular dynamics.
Main Methods:
- Neutron scattering experiments were conducted on dry and hydrated lysozyme.
- Experiments utilized varying instrumental energy resolutions to probe system dynamics.
Main Results:
- The 'dynamical transition' is an artifact of finite instrumental energy resolution, occurring when system relaxation time matches resolution time.
- No actual transition in dynamical properties of the systems was detected.
- The previously reported change in τ-temperature dependence at 220 K was confirmed and is not an artifact of resolution or numerical errors.
Conclusions:
- The observed dynamical transition in lysozyme is an experimental artifact, not an intrinsic property of the macromolecule.
- The study refutes the fragile-to-strong dynamical crossover as the cause of this artifact.
- The findings clarify the temperature dependence of macromolecular dynamics, resolving long-standing debates.
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