From genomic databases to translation: a call to action.
Bartha Maria Knoppers1, Jennifer R Harris, Paul R Burton
1Department of Human Genetics, McGill University, Montreal, Quebec, H3A 1A4, Canada. bartha.knoppers@mcgill.ca
Journal of Medical Ethics
|May 28, 2011
Summary
International collaboration provides genomic data access. Extending data sharing is crucial for understanding complex diseases and improving treatments, moving beyond simple variation mapping.
Area of Science:
- Genomics
- Bioinformatics
- Translational Medicine
Background:
- International scientific collaboration has increased access to valuable genomic datasets.
- Current genomic data sharing primarily focuses on mapping genetic variations.
Purpose of the Study:
- To advocate for enhanced data sharing in genomic research.
- To bridge the gap between genomic variation mapping and understanding complex disease aetiology.
- To facilitate the translation and implementation of genomic findings into clinical practice.
Main Methods:
- This study presents an argument based on the current landscape of genomic data sharing.
- It reviews the progression from genomic variation mapping to clinical application.
- The core method is a critical analysis of existing data sharing practices.
Main Results:
- The rapid expansion of international collaborative science has significantly improved access to genomic data.
- A critical need exists to extend data sharing beyond basic variation mapping.
- Enhanced data sharing is essential for advancing the understanding of complex disease causes.
Conclusions:
- Moving beyond genomic variation mapping requires broader data sharing.
- Extended data sharing is vital for understanding complex disease etiology and developing effective treatments.
- The future of genomic medicine relies on robust data sharing for clinical translation and implementation.
Related Concept Videos
02:11Proteins: From Genes to Degradation
Within a biological system, the DNA encodes the RNA, and the nucleotide sequence in the RNA further defines the amino acid sequence in the protein. This is referred to as “The Central Dogma of Molecular Biology” - a term coined by Francis Crick. Central dogma is a firm principle in biology that defines the flow of genetic information within any life form. The two fundamental steps in central dogma are - transcription and translation.
Transcription is the synthesis of RNA molecules by RNA...
Transcription is the synthesis of RNA molecules by RNA...
02:24Ribosome Profiling
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...
02:28Leaky Scanning
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA. Marilyn Kozak discovered that the sequence RCCAUGG (where R stands for...
01:31Translation
Lesson: Translation
Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
Translation Produces the Building Blocks of Life
Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
Translation Produces the Building Blocks of Life
01:31Translation
Lesson: Translation
Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
Translation Produces the Building Blocks of Life
Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
Translation Produces the Building Blocks of Life
02:02Genomics
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...