Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Model Approaches for Pharmacokinetic Data: Distributed Parameter Models01:06

Model Approaches for Pharmacokinetic Data: Distributed Parameter Models

Pharmacokinetic models are mathematical constructs that represent and predict the time course of drug concentrations in the body, providing meaningful pharmacokinetic parameters. These models are categorized into compartment, physiological, and distributed parameter models.
The distributed parameter models are specifically designed to account for variations and differences in some drug classes. This model is particularly useful for assessing regional concentrations of anticancer or...
Model Approaches for Pharmacokinetic Data: Physiological Models01:15

Model Approaches for Pharmacokinetic Data: Physiological Models

Physiological models in pharmacokinetics are instrumental in understanding the distribution and elimination of drugs within the body. These models describe the drug concentration within target organs, influenced by factors such as drug uptake, tissue volume, and blood flow. Drug uptake is governed by the partition coefficient, which signifies the drug concentration ratio in tissue to that in the blood. The blood flow rate to a specific tissue is expressed as Qt, and the rate of change in tissue...
Mechanistic Models: Compartment Models in Individual and Population Analysis01:23

Mechanistic Models: Compartment Models in Individual and Population Analysis

Mechanistic models are utilized in individual analysis using single-source data, but imperfections arise due to data collection errors, preventing perfect prediction of observed data. The mathematical equation involves known values (Xi), observed concentrations (Ci), measurement errors (εi), model parameters (ϕj), and the related function (ƒi) for i number of values. Different least-squares metrics quantify differences between predicted and observed values. The ordinary least squares (OLS)...
Pharmacokinetic Models: Comparison and Selection Criterion01:26

Pharmacokinetic Models: Comparison and Selection Criterion

Physiological and compartmental models are valuable tools used in studying biological systems. These models rely on differential equations to maintain mass balance within the system, ensuring an accurate representation of the dynamic processes at play.
Physiological models take a detailed approach by considering specific molecular processes. They can predict drug distribution, metabolism, and elimination changes, providing a comprehensive understanding of how drugs interact with the body.
Physiological Pharmacokinetic Models: Blood Flow-Limited Versus Diffusion-Limited Models00:57

Physiological Pharmacokinetic Models: Blood Flow-Limited Versus Diffusion-Limited Models

Physiological pharmacokinetic models, often called flow-limited or perfusion models, typically assume a swift drug distribution between tissue and venous blood, creating a rapid drug equilibrium. This premise is based on the idea that drug diffusion is extremely fast, and the cell membrane presents no barrier to drug permeation. In this scenario, where no drug binding occurs, the drug concentration in the tissue equals that of the venous blood leaving the tissue. This greatly simplifies the...
Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving01:29

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving

Mechanistic models play a crucial role in algorithms for numerical problem-solving, particularly in nonlinear mixed effects modeling (NMEM). These models aim to minimize specific objective functions by evaluating various parameter estimates, leading to the development of systematic algorithms. In some cases, linearization techniques approximate the model using linear equations.
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Toward real-time alignment of 3D CT and 2D X-ray with multi-stage CNNs.

Computer assisted surgery (Abingdon, England)·2026
Same author

A deep-learning framework reveals whole-body perturbations at cell level.

Nature·2026
Same author

Multi-structure segmentation in CBCT volumes: The ToothFairy2 challenge.

Medical image analysis·2026
Same author

Recovery of daily life upper limb use during stroke rehabilitation: neuroanatomical correlates and associated variables.

Journal of neurology, neurosurgery, and psychiatry·2026
Same author

Study of French inter-expert variability in thyroid nodule ultrasound.

European thyroid journal·2026
Same author

Head-to-head comparison of non-invasive markers of atrial cardiomyopathy and their association with arrhythmia recurrence after atrial fibrillation ablation.

Clinical research in cardiology : official journal of the German Cardiac Society·2026

Related Experiment Video

Updated: May 31, 2026

Patient-specific Modeling of the Heart: Estimation of Ventricular Fiber Orientations
12:09

Patient-specific Modeling of the Heart: Estimation of Ventricular Fiber Orientations

Published on: January 8, 2013

Efficient probabilistic model personalization integrating uncertainty on data and parameters: Application to

Ender Konukoglu1, Jatin Relan, Ulas Cilingir

  • 1Microsoft Research Cambridge, UK. ender.konukoglu@live.com

Progress in Biophysics and Molecular Biology
|July 19, 2011
PubMed
Summary

This study introduces an efficient Bayesian inference method for personalizing biophysical models using polynomial chaos and compressed sensing. The approach quantifies uncertainty in patient-specific models, crucial for reliable clinical applications.

More Related Videos

Creating a Structurally Realistic Finite Element Geometric Model of a Cardiomyocyte to Study the Role of Cellular Architecture in Cardiomyocyte Systems Biology
08:54

Creating a Structurally Realistic Finite Element Geometric Model of a Cardiomyocyte to Study the Role of Cellular Architecture in Cardiomyocyte Systems Biology

Published on: April 18, 2018

Related Experiment Videos

Last Updated: May 31, 2026

Patient-specific Modeling of the Heart: Estimation of Ventricular Fiber Orientations
12:09

Patient-specific Modeling of the Heart: Estimation of Ventricular Fiber Orientations

Published on: January 8, 2013

Creating a Structurally Realistic Finite Element Geometric Model of a Cardiomyocyte to Study the Role of Cellular Architecture in Cardiomyocyte Systems Biology
08:54

Creating a Structurally Realistic Finite Element Geometric Model of a Cardiomyocyte to Study the Role of Cellular Architecture in Cardiomyocyte Systems Biology

Published on: April 18, 2018

Area of Science:

  • Computational physiology
  • Biophysical modeling
  • Medical applications

Background:

  • Biophysical models are vital for organ-scale medical applications but lack confidence measures due to data sparsity, noise, and soft tissue complexity.
  • Uncertainty quantification is critical for the clinical utility of personalized computational physiology models.
  • Estimating patient-specific parameters for stochastic models remains a challenge.

Purpose of the Study:

  • To develop an efficient Bayesian inference method for personalizing biophysical models.
  • To enable uncertainty quantification in patient-specific computational physiology.
  • To facilitate the clinical application of personalized models by providing confidence measures.

Main Methods:

  • Utilized polynomial chaos and compressed sensing for efficient Bayesian inference.
  • Applied the method to cardiac electrophysiology models.
  • Validated on synthetic data and applied to clinical data for uncertainty assessment.

Main Results:

  • Demonstrated the feasibility of Bayesian inference for 3D modeling problems.
  • Quantified the impact of data characteristics on model personalization and prediction accuracy.
  • Showcased the method's ability to handle uncertainties in data and model parameters.

Conclusions:

  • The proposed method makes Bayesian inference computationally tractable for complex 3D models.
  • This approach provides essential uncertainty quantification for personalized biophysical models in clinical settings.
  • The method supports the optimization of treatment by providing confidence in personalized model predictions.