Related Experiment Video
Updated: May 30, 2026

07:36
Fabricating Nanogaps by Nanoskiving
Published on: May 13, 2013
Gap distance and interactions in a molecular tunnel junction
Shuai Chang1, Jin He, Peiming Zhang
1Department of Physics, Arizona State University, Tempe, Arizona 85287, USA.
Journal of the American Chemical Society
|August 16, 2011
Summary
Interfacial forces distort nanoscale electrode geometry in molecular junctions. Chemical interactions reveal distinct features in break-junction data, enabling precise electrode separation determination for DNA sequencing reagents.
Area of Science:
- Nanotechnology
- Molecular Electronics
- Chemical Sensing
Background:
- Determining electrode distance in tunnel junctions is challenging due to nanoscale interfacial forces.
- Molecular presence complicates electrode geometry, affecting measurements.
- AC response measurements are sensitive to junction properties.
Purpose of the Study:
- To investigate the impact of interfacial forces and molecular interactions on electrode separation in tunnel junctions.
- To demonstrate a method for accurately determining electrode separation in molecular junctions.
- To utilize specific chemical interactions for precise nanoscale measurements.
Main Methods:
- Measurements of the AC response of a molecular junction across a wide conductivity range (microsiemens to picosiemens).
- Utilizing break-junction techniques to analyze junction data.
- Functionalizing the junction with 4(5)-(2-mercaptoethyl)-1H-imidazole-2-carboxamide.
Main Results:
- Interfacial forces cause significant nanoscale distortions in electrode geometry.
- Distinct features in break-junction data correlate with specific chemical interactions.
- The study successfully determined electrode separation in a functionalized molecular junction.
Conclusions:
- AC response analysis of molecular junctions can overcome challenges posed by interfacial forces.
- Specific chemical interactions provide reliable markers for precise electrode separation determination.
- The developed method is applicable to molecular junctions functionalized with DNA sequencing reagents.
Related Concept Videos
Gap Junctions
Multicellular organisms employ a variety of ways for cells to communicate with each other. Gap junctions are specialized proteins that form pores between neighboring cells in animals, connecting the cytoplasm between the two, and allowing for the exchange of molecules and ions. They are found in a wide range of invertebrate and vertebrate species, mediate numerous functions including cell differentiation and development, and are associated with numerous human diseases, including cardiac and...
Gap Junctions
The cytoplasm of adjacent animal cells can exchange small molecules, ions, and secondary messengers via the communication channels which form the gap junctions. These junctions comprise a few hundred to thousands of molecular channels, each made of two halves, called the connexon hemichannel. A connexon is a hexamer of six transmembrane connexin proteins, which assemble radially, thus forming a pore or channel in the center. One connexon hemichannel docks with a corresponding connexon on the...
Van der Waals Interactions
Atoms and molecules interact with each other through intermolecular forces. These electrostatic forces arise from attractive or repulsive interactions between particles with permanent, partial, or temporary charges. The intermolecular forces between neutral atoms and molecules are ion–dipole, dipole–dipole, and dispersion forces, collectively known as van der Waals forces.
Contact-dependent Signaling
Contact-dependent signaling, as the name suggests, requires that communicating cells be in direct contact with each other. This is achieved either through receptor-ligand interactions or by specialized cytoplasmic channels that allow the flow of small molecules between cells. In animal cells, channels called gap junctions facilitate contact-dependent signaling in certain tissues, whereas, plasmodesmata perform a similar function in plants.
Gap Junctions
In animal cells, gap junctions are formed...
Gap Junctions
In animal cells, gap junctions are formed...
Overview of Cell-Cell Junctions
The complex three-dimensional arrangement of cells in any multicellular organism is defined and maintained by interactions of cells with each other and the extracellular matrix. Cell-cell junctions are specialized structures where the multi-protein complexes on one cell interact with the multi-protein complexes on another cell. These cell junctions are classified into three main types based on their function — occluding, anchoring, and gap junctions.
Occluding or Tight Junctions
Tight...
Occluding or Tight Junctions
Tight...
Tight Junctions
Tight junctions are molecular seals between cells that prevent the leaking of fluids, ions, and other small solutes across cavities and compartments in multicellular organisms. They are mainly composed of claudin and occludin transmembrane proteins, and other proteins such as tricellulin and JAM (junctional adhesion molecule). All these proteins are 4-pass transmembrane proteins, except JAM, which is a single-pass transmembrane protein belonging to the immunoglobulin superfamily. The...

