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Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions
Published on: June 28, 2018
GeBP/GPL transcription factors regulate a subset of CPR5-dependent processes
Daniel Perazza1, Frédéric Laporte, Claudine Balagué
1Institut Albert Bonniot, Institut National de la Santé et de la Recherche Médicale/Université Joseph Fourier U823, Equipe Interference ARN et Epigenetique, Rond-point de la Chantourne, 38706 La Tronche cedex, France.
The CONSTITUTIVE EXPRESSOR OF PATHOGENESIS-RELATED GENES5 (CPR5) gene and GLABRA1 ENHANCER BINDING PROTEIN (GeBP) transcription factors have opposite roles in plant cell expansion. CPR5 is localized to the nucleus and likely involved in transcription.
Area of Science:
- Plant molecular biology
- Plant genetics
- Cell biology
Background:
- The CONSTITUTIVE EXPRESSOR OF PATHOGENESIS-RELATED GENES5 (CPR5) gene in Arabidopsis thaliana has pleiotropic functions in pathogen responses, cell proliferation, expansion, and death.
- The biochemical function of the CPR5 protein, a putative membrane protein, is largely unknown.
- The GLABRA1 ENHANCER BINDING PROTEIN (GeBP) family of transcription factors are involved in plant development.
Purpose of the Study:
- To investigate the relationship between CPR5 and the GeBP/GeBP-like (GPL) transcription factors.
- To elucidate the role of GeBP/GPL genes in plant development and stress responses.
- To determine the subcellular localization and functional domains of the CPR5 protein.
Main Methods:
- Transcriptomic analysis of quadruple gebp gpl1,2,3 mutants and overexpressing lines.
- Analysis of a quintuple gebp gpl1,2,3 cpr5 mutant.
- Subcellular localization studies of the CPR5 protein.
- Functional analysis of a truncated CPR5 protein fused to a transcriptional activation domain.
Main Results:
- GeBP/GPLs regulate a subset of genes within the CPR5 pathway, including those involved in stress response and cell wall metabolism.
- GeBP/GPLs control cell expansion in a CPR5-dependent manner, but not cell proliferation.
- CPR5 protein is localized to the nucleus, and a truncated version can induce CPR5-like phenotypes.
- CPR5 and GeBP/GPLs exhibit opposing roles in regulating cell expansion.
Conclusions:
- GeBP/GPL transcription factors are involved in a CPR5-dependent pathway controlling cell expansion.
- The CPR5 protein likely functions in the nucleus and plays a role in transcriptional regulation.
- CPR5 and GeBP/GPLs have antagonistic roles in plant cell expansion, providing insights into developmental control mechanisms.
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