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Updated: May 29, 2026

Automated Segmentation of Cortical Grey Matter from T1-Weighted MRI Images
Published on: January 7, 2019
[MRI kidney segmentation based on thresholding and active contour model]
Xiaowei Wu1, Chuanqing Zhou, Qiu-Shi Ren
1Department of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200240, China.
Abstract:
The proposed hybrid image segmentation method, based on MRI renal images, aims at extracting the cortical and medullary regions of the kidney. It incorporates the thresholding segmentation and the active contour model. To begin with, the binary mask was obtained by preprocessing and thresholding. Then, the manually set starting contour deformed like a balloon under the framework of a simplified active contour model, thus getting the initial contour of the medulla or the cortex. Finally, the initial contour deformed according to the traditional active contour model and was attracted by the actual boundary of the tissues, defined by the gradient image.
