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Updated: May 28, 2026

Isolation of Culturable Yeasts and Molds from Soils to Investigate Fungal Population Structure
Published on: May 27, 2022
Routine processing procedures for isolating filamentous fungi from respiratory sputum samples may underestimate
Catherine H Pashley1, Abbie Fairs, Joseph P Morley
1Institute for Lung Health, Department of Infection, Immunity and Inflammation, University of Leicester, Leicester, UK. chp5@le.ac.uk
Abstract:
Colonization of the airways by filamentous fungi can occur in asthma, chronic obstructive pulmonary disease (COPD) and cystic fibrosis. A recent study found IgE sensitization to Aspergillus fumigatus to be associated with reduced lung function. Significantly higher rates of A. fumigatus were detected in sputum from asthmatics sensitized to this fungus compared to non-sensitized asthmatics. The rate of positive cultures was far higher than equivalent historical samples analysed by the local clinical laboratory following protocols recommended by the UK Health Protection Agency (HPA). This study compares the HPA procedure with our sputum processing method, whereby sputum plugs are separated from saliva and aliquots of approximately 150 mg are inoculated directly onto potato dextrose agar. A total of 55 sputum samples from 41 patients with COPD were analyzed, comparing fungal recovery of five dilutions of sputa on two media. Isolation of A. fumigatus in culture was significantly higher using the research approach compared to the HPA standard method for mycological investigations (P < 0.001). There was also a significant difference in the recovery rate of A. fumigatus (P < 0.05) between media. This highlights the need for a standardized approach to fungal detection which is more sensitive than the method recommended by the HPA.
Insights
A new sputum processing method significantly improves the detection of Aspergillus fumigatus in patients with chronic obstructive pulmonary disease (COPD). This research-based approach offers higher fungal recovery rates compared to standard UK Health Protection Agency protocols.
Area of Science:
- Medical Mycology
- Pulmonary Medicine
- Clinical Microbiology
Background:
- Airway colonization by filamentous fungi is common in respiratory diseases like asthma, COPD, and cystic fibrosis.
- IgE sensitization to Aspergillus fumigatus correlates with reduced lung function and higher fungal detection rates in asthma patients.
Purpose of the Study:
- To compare the efficacy of a novel sputum processing method against the UK Health Protection Agency (HPA) standard method for detecting Aspergillus fumigatus.
- To evaluate fungal recovery rates from COPD patient sputum using different processing techniques and culture media.
Main Methods:
- Sputum plugs from 41 COPD patients were processed, separating them from saliva.
- Aliquots of approximately 150 mg were inoculated directly onto potato dextrose agar.
- Fungal recovery was compared between five dilutions of sputa on two different media using the research method versus the HPA method.
Main Results:
- The research-based sputum processing method yielded significantly higher isolation rates of Aspergillus fumigatus compared to the HPA standard method (P < 0.001).
- A significant difference in Aspergillus fumigatus recovery rates was also observed between the two culture media used (P < 0.05).
Conclusions:
- The developed research method for sputum processing is more sensitive for detecting Aspergillus fumigatus than the current HPA recommended protocol.
- Standardization of fungal detection methods is crucial for accurate diagnosis and management of fungal-related respiratory conditions.
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