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Synthesizing Amino Acids Modified with Reactive Carbonyls in Silico to Assess Structural Effects Using Molecular Dynamics Simulations
Published on: April 26, 2024
Structural and functional impact of site-directed methionine oxidation in myosin
Jennifer C Klein1, Rebecca J Moen, Evan A Smith
1Department of Chemistry, Saint Olaf College, Northfield, Minnesota 55057, United States.
Abstract:
We have examined the structural and functional effects of site-directed methionine oxidation in Dictyostelium (Dicty) myosin II using mutagenesis, in vitro oxidation, and site-directed spin-labeling for electron paramagnetic resonance (EPR). Protein oxidation by reactive oxygen and nitrogen species is critical for normal cellular function, but oxidative stress has been implicated in disease progression and biological aging. Our goal is to bridge understanding of protein oxidation and muscle dysfunction with molecular-level insights into actomyosin interaction. In order to focus on methionine oxidation and to facilitate site-directed spectroscopy, we started with a Cys-lite version of Dicty myosin II. For Dicty myosin containing native methionines, peroxide treatment decreased actin-activated myosin ATPase activity, consistent with the decline in actomyosin function previously observed in biologically aged or peroxide-treated muscle. Methionine-to-leucine mutations, used to protect specific sites from oxidation, identified a single methionine that is functionally sensitive to oxidation: M394, near the myosin cardiomyopathy loop in the actin-binding interface. Previously characterized myosin labeling sites for spectroscopy in the force-producing region and actin-binding cleft were examined; spin-label mobility and distance measurements in the actin-binding cleft were sensitive to oxidation, but particularly in the presence of actin. Overall secondary structure and thermal stability were unaffected by oxidation. We conclude that the oxidation-induced structural change in myosin includes a redistribution of existing structural states of the actin-binding cleft. These results will be applicable to the many biological and therapeutic contexts in which a detailed understanding of protein oxidation as well as function and structure relationships is sought.
Insights
Site-directed methionine oxidation in Dictyostelium myosin II reveals M394 is sensitive to oxidation, impacting actomyosin function. This oxidation causes structural changes in the actin-binding cleft, relevant to aging and disease.
Area of Science:
- Biochemistry
- Molecular Biology
- Structural Biology
Background:
- Protein oxidation is crucial for cellular function but implicated in aging and disease.
- Oxidative stress can impair muscle function, linked to actomyosin dysfunction.
- Understanding molecular mechanisms of protein oxidation is vital for disease and aging research.
Purpose of the Study:
- To investigate the structural and functional consequences of methionine oxidation in Dictyostelium myosin II.
- To identify specific methionine residues sensitive to oxidation and their impact on actomyosin interactions.
- To correlate molecular-level oxidation effects with observed muscle dysfunction.
Main Methods:
- Site-directed mutagenesis to create methionine-to-leucine variants.
- In vitro oxidation using peroxide.
- Site-directed spin labeling and electron paramagnetic resonance (EPR) spectroscopy.
- Measurement of actin-activated myosin ATPase activity.
Main Results:
- Peroxide treatment reduced actin-activated myosin ATPase activity in native Dicty myosin II.
- Methionine-to-leucine mutations identified M394 as a key oxidation-sensitive site near the actin-binding interface.
- EPR studies showed oxidation altered spin-label mobility and distances in the actin-binding cleft, especially with actin present.
- Overall protein secondary structure and thermal stability remained unaffected by oxidation.
Conclusions:
- Oxidation-induced structural changes in myosin II involve a redistribution of conformational states within the actin-binding cleft.
- Methionine oxidation, particularly at M394, directly impacts actomyosin function.
- These findings provide molecular insights into protein oxidation's role in muscle dysfunction, aging, and disease.
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