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Updated: May 28, 2026

Novel Sequence Discovery by Subtractive Genomics
09:40

Novel Sequence Discovery by Subtractive Genomics

Published on: January 25, 2019

JaPaFi: A Novel Program for the Identification of Highly Conserved DNA Sequences

Aliya Sadeque1, Marina Barsky2, Francesco Marass1

  • 1Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC, V8W 3P6, Canada.

Viruses
|October 14, 2011
PubMed
Summary

Java Pattern Finder (JaPaFi) identifies conserved DNA sequences in poxviruses without genome alignment. This tool aids in discovering essential genetic elements like promoter regions within viral genomes.

Keywords:
JaPaFiPoxvirusapproximate matchbioinformaticsconserved functionhighly conserved sequences

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