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Navigating the Mass Spectrometry-Based Proteomic Data Using Free Computational Tools
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PSMatch: An R/Bioconductor Package to Explore Proteomics Identification Data

Guillaume Deflandre1, Sebastien Gibb2, Laurent Gatto3

  • 1de Duve Institute, UCLouvain, Brussels, Belgium.

Methods in Molecular Biology (Clifton, N.J.)
|October 15, 2026
PubMed

Keywords:
BioconductorIdentificationMass spectrometryPTMProteomicsRReproducible researchSoftwareVisualization

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Proteomics01:33

Proteomics

A proteome is the entire set of proteins that a cell type produces. We can study proteomes using the knowledge of genomes because genes code for mRNAs, and the mRNAs encode proteins. Although mRNA analysis is a step in the right direction, not all mRNAs are translated into proteins.
Proteomics is the study of proteomes' function. It involves the large-scale systematic study of the proteome to denote the protein complement expressed by a genome. Scientist Mark Wilkins coined the term proteomics...