Related Experiment Video
Updated: Aug 17, 2026

08:09
Peptide Scanning-assisted Identification of a Monoclonal Antibody-recognized Linear B-cell Epitope
Published on: March 24, 2017
Peptide sequences that target cytosolic proteins for lysosomal proteolysis
1Department of Physiology, Tufts University School of Medicine, Boston, MA 02111.
Trends in Biochemical Sciences
|August 1, 1990
Summary
Cells degrade intracellular proteins via lysosomes, especially during starvation. A key mechanism involves specific peptide sequences, Lys-Phe-Glu-Arg-Gln (KFERQ), on proteins targeted for breakdown.
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- Lysosomes are crucial for cellular protein degradation.
- Cells utilize lysosomal degradation pathways in response to nutrient deprivation, such as serum deprivation or starvation.
- Specific protein targeting mechanisms are involved in delivering substrates to lysosomes.
Purpose of the Study:
- To elucidate the mechanisms by which intracellular proteins are targeted for lysosomal degradation.
- To identify specific molecular signals that mediate protein uptake by lysosomes.
Main Methods:
- Investigated protein degradation in cultured cells under serum-deprived conditions.
- Examined protein degradation in tissues of organisms experiencing starvation.
- Analyzed the role of specific peptide sequences in substrate recognition and lysosomal transport.
Main Results:
- Lysosomal uptake and degradation of intracellular proteins are induced by serum deprivation in cultured cells and starvation in vivo.
- A conserved pentapeptide motif, Lys-Phe-Glu-Arg-Gln (KFERQ), was identified as a critical signal on substrate proteins.
- Proteins containing the KFERQ motif are preferentially recognized and degraded by lysosomes.
Conclusions:
- The KFERQ motif serves as a biochemical tag for the selective degradation of intracellular proteins by lysosomes.
- This pathway is a significant mechanism for cellular protein turnover, particularly under stress conditions like starvation.
- Understanding the KFERQ-mediated pathway offers insights into cellular homeostasis and disease.
Related Concept Videos
The Proteasome
Eukaryotic cells can degrade proteins through several pathways. One of the most important amongst these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
Mitochondrial Precursor Proteins
Mitochondrial precursors are partially unfolded or loosely folded polypeptide chains. Newly synthesized precursors are inhibited from spontaneously folding into their native conformation by the cytosolic chaperones, heat shock proteins 70 (Hsp70), and mitochondrial import stimulation factors (MSFs). Precursors bound to MSFs are guided to the TOM70-TOM37 receptors, while precursors bound to Hsp70 chaperones are targetted to TOM20-TOM22 receptor complexes.
Most of the mitochondrial precursors...
Most of the mitochondrial precursors...
Translocation of Proteins into the Mitochondria
Mitochondrial precursors are translocated to the internal subcompartments via independent mechanisms involving distinct protein machineries called translocases.
Sorting of outer membrane proteins:
Mitochondrial outer membrane proteins are of two types: the transmembrane, beta-barrel porins, and the membrane-anchored, alpha-helical proteins. Beta-barrel porin precursors are translocated by the TOM complex and inserted into the outer mitochondrial membrane by the SAM complex. In contrast,...
Sorting of outer membrane proteins:
Mitochondrial outer membrane proteins are of two types: the transmembrane, beta-barrel porins, and the membrane-anchored, alpha-helical proteins. Beta-barrel porin precursors are translocated by the TOM complex and inserted into the outer mitochondrial membrane by the SAM complex. In contrast,...
Lysosomal Hydrolases
Lysosomes are the site for the degradation of macromolecules and biological polymers released during membrane trafficking events such as secretory, endocytic, autophagic, and phagocytic pathways. The membrane-enclosed area of the lysosome, called the lumen, contains hydrolytic enzymes active in an acidic environment. These acid hydrolases are functional at a pH between 4.5 and 5 and are involved in cellular processes such as cell signaling, energy metabolism, restoration of the plasma membrane,...
The Proteasome
Eukaryotic cells can degrade proteins through several pathways. One of the most important among these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3 (ubiquitin...
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3 (ubiquitin...
The Proteasome Structure
The ubiquitin-proteasome pathway is a well-known mechanism utilized by eukaryotic cells to remove cytoplasmic proteins that are misfolded, damaged, or no longer needed. In this pathway, the protein that needs to be eliminated undergoes a process called ubiquitination, where a chain of ubiquitin molecules is attached to the 48th lysine residue of the target protein. This ubiquitin modification helps the proteasome distinguish between a target protein and a healthy protein.
The proteasome is an...
The proteasome is an...

