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Updated: May 27, 2026

A Reporter Assay to Analyze Intronic microRNA Maturation in Mammalian Cells
Published on: June 16, 2022
The mRNA stability factor HuR inhibits microRNA-16 targeting of COX-2
Lisa E Young1, Ashleigh E Moore, Lena Sokol
1Department of Biological Sciences and Center for Colon Cancer Research, University of South Carolina, Columbia, SC 29208, USA.
Abstract:
Commonly observed in colorectal cancer is the elevated expression of the prostaglandin (PG) synthase COX-2. In normal intestinal epithelium, the COX-2 mRNA is targeted for rapid decay through the 3'-untranslated region (3'-UTR) adenylate- and uridylate (AU)-rich element (ARE), whereas in tumors ARE-mediated decay is compromised. Here we show that the COX-2 ARE can mediate degradation through microRNA (miRNA)-mediated regulation. We identified miR-16 to bind the COX-2 3'-UTR and inhibit COX-2 expression by promoting rapid mRNA decay. In colorectal cancer cells and tumors, miR-16 levels were decreased approximately twofold and miR-16 expression in cancer cells attenuated COX-2 expression and PG synthesis. The COX-2 ARE is also bound by the RNA-binding protein HuR. In colorectal cancer tumors, HuR is overexpressed and localized within the cytoplasm, where it promotes ARE-mRNA stabilization. Under conditions of HuR overexpression, miR-16 was unable to promote rapid mRNA decay through the COX-2 ARE. Ribonucleoprotein immunoprecipitation of HuR showed direct association with miR-16 that was reversed when cytoplasmic trafficking of HuR was inhibited. Furthermore, this interaction between HuR and miR-16 promoted the downregulation of miR-16. These new results identify miR-16 as a central posttranscriptional regulator of COX-2 and show the ability of elevated levels of HuR to antagonize miR-16 function. Along with insight into altered ARE-mediated mRNA decay observed in colorectal cancer, these findings provide a new explanation for tumor-derived loss of miR-16.
Insights
MicroRNA-16 (miR-16) normally degrades prostaglandin synthase COX-2 messenger RNA (mRNA) in the intestine. In colorectal cancer, reduced miR-16 and increased HuR protein disrupt this process, promoting tumor growth.
Area of Science:
- Molecular Biology
- Cancer Research
- Post-transcriptional Regulation
Background:
- Elevated cyclooxygenase-2 (COX-2) expression is common in colorectal cancer.
- In healthy cells, COX-2 messenger RNA (mRNA) decay is mediated by an adenylate- and uridylate (AU)-rich element (ARE) in its 3'-untranslated region (3'-UTR).
- This decay mechanism is impaired in colorectal tumors.
Purpose of the Study:
- To investigate the role of microRNA (miRNA) in regulating COX-2 mRNA decay via the 3'-UTR ARE.
- To determine the impact of miR-16 and HuR on COX-2 expression in colorectal cancer.
Main Methods:
- Identified miR-16 binding to the COX-2 3'-UTR using molecular assays.
- Quantified miR-16 levels in colorectal cancer cells and tumors.
- Assessed the effect of miR-16 expression on COX-2 and prostaglandin synthesis.
- Investigated the interaction between HuR, miR-16, and COX-2 mRNA using ribonucleoprotein immunoprecipitation and cellular localization studies.
Main Results:
- miR-16 directly binds to the COX-2 3'-UTR, promoting mRNA decay and inhibiting COX-2 expression.
- Colorectal cancer cells and tumors exhibit approximately twofold lower miR-16 levels.
- Overexpressed cytoplasmic HuR in tumors stabilizes COX-2 mRNA, antagonizing miR-16's decay-promoting function.
- HuR directly interacts with miR-16, leading to miR-16 downregulation.
Conclusions:
- miR-16 is a key post-transcriptional regulator of COX-2 expression.
- Elevated HuR levels in colorectal cancer counteract miR-16 activity, contributing to COX-2 overexpression.
- These findings offer a novel explanation for the loss of miR-16 and altered mRNA decay in colorectal tumors.
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