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Updated: May 27, 2026

Malachite Green Assay for the Discovery of Heat-Shock Protein 90 Inhibitors
Published on: January 20, 2023
Using the heat-shock response to discover anticancer compounds that target protein homeostasis
Sandro Santagata1, Ya-Ming Xu, E M Kithsiri Wijeratne
1Department of Pathology, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts 02115, United States.
Abstract:
Unlike normal tissues, cancers experience profound alterations in protein homeostasis. Powerful innate adaptive mechanisms, especially the transcriptional response regulated by Heat Shock Factor 1 (HSF1), are activated in cancers to enable survival under these stressful conditions. Natural products that further tax these stress responses can overwhelm the ability to cope and could provide leads for the development of new, broadly effective anticancer drugs. To identify compounds that drive the HSF1-dependent stress response, we evaluated over 80,000 natural and synthetic compounds as well as partially purified natural product extracts using a reporter cell line optimized for high-throughput screening. Surprisingly, many of the strongly active compounds identified were natural products representing five diverse chemical classes (limonoids, curvularins, withanolides, celastraloids, and colletofragarones). All of these compounds share the same chemical motif, an α,β-unsaturated carbonyl functionality, with strong potential for thiol-reactivity. Despite the lack of a priori mechanistic requirements in our primary phenotypic screen, this motif was found to be necessary albeit not sufficient, for both heat-shock activation and inhibition of glioma tumor cell growth. Within the withanolide class, a promising therapeutic index for the compound withaferin A was demonstrated in vivo using a stringent orthotopic human glioma xenograft model in mice. Our findings reveal that diverse organisms elaborate structurally complex thiol-reactive metabolites that act on the stress responses of heterologous organisms including humans. From a chemical biology perspective, they define a robust approach for discovering candidate compounds that target the malignant phenotype by disrupting protein homeostasis.
Insights
Natural products with thiol-reactive motifs can overwhelm cancer
Area of Science:
- Chemical biology
- Molecular oncology
- Natural product chemistry
Background:
- Cancers exhibit altered protein homeostasis, activating stress responses like Heat Shock Factor 1 (HSF1).
- Targeting these cancer-specific stress adaptations offers a strategy for novel anticancer drug development.
Purpose of the Study:
- To identify compounds that activate HSF1-dependent stress responses for potential anticancer applications.
- To explore natural products as a source of novel anticancer agents targeting protein homeostasis.
Main Methods:
- High-throughput screening of over 80,000 natural and synthetic compounds using an HSF1 reporter cell line.
- Evaluation of chemical motifs for activity in heat-shock activation and cancer cell growth inhibition.
- In vivo testing of promising compounds in a human glioma xenograft mouse model.
Main Results:
- Identification of five diverse natural product classes (limonoids, curvularins, withanolides, celastraloids, colletofragarones) with strong HSF1-activating potential.
- A shared α,β-unsaturated carbonyl motif was found necessary for activity, indicating thiol-reactivity.
- Withaferin A demonstrated a promising therapeutic index in an in vivo glioma model.
Conclusions:
- Diverse natural products possess thiol-reactive metabolites that disrupt protein homeostasis in cancer cells.
- This study defines a chemical biology approach to discover anticancer compounds targeting malignant phenotypes.
- Natural products offer a rich source for developing broadly effective anticancer drugs by modulating stress responses.
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