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Updated: May 27, 2026

An In Vitro Protocol for Evaluating MicroRNA Levels, Functions, and Associated Target Genes in Tumor Cells
Published on: May 21, 2019
MicroRNA-1 induces apoptosis by targeting prothymosin alpha in nasopharyngeal carcinoma cells
Cheng-Der Wu1, Yuan-Sung Kuo, Han-Chung Wu
1Institute of Pathology, College of Medicine, National Taiwan University, Taipei, Taiwan.
Background:
MiR-1 (microRNA-1) has been used as a positive control in some microRNA experiments. We found that miR-1 transfection of nasopharyngeal carcinoma cells reveals a typical apoptotic process as shown by time-lapse microscopy so we investigated the mechanisms of miR-1 inducing apoptosis.
Methods:
To confirm that miR-1 induces apoptosis, we used Annexin V and TUNEL staining and caspase assay. To determine that miR-1 directly targets genes that involve in apoptosis, we analyzed microRNA and pathway databases, and cDNA expression microarrays from miR-1 transfected cells. To demonstrate candidate miR-1 targeted genes, we used qRT-PCR analysis and luciferase reporter vector assays. To assess the miR-1 target gene PTMA (prothymosin alpha, ProTalpha) involves in apoptosis, we used PTMA siRNA to knock down PTMA.
Results:
Annexin V and TUNEL staining and caspase assay confirm that miR-1 induces nasopharyngeal carcinoma cell apoptosis. MiR-1 transfection of HeLa, Cal-27, KYSE30 and NPC-TW06 cell lines which express low levels of endogenous miR-1 also induces apoptosis. However, miR-1 transfection of cell lines such as SW620, HepG2, HEK-293T, SAS and PC-13 which express high levels of endogenous miR-1 does not result in apoptosis. MiR-1 directly targets PTMA gene. PTMA siRNA and miR-1 accelerate the apoptotic process in cells treated with apoptosis inducers.
Conclusions:
The exogenous expression of miR-1 induces apoptosis in a number of cell lines. This is a model of microRNA-induced cell apoptosis. The PTMA is one of miR-1 target genes which involve in miR-1 inducing apoptosis. The apoptotic inducers including actinomycin D, camptothecin and etoposide are also the chemotherapeutic drugs in clinical cancer therapy and PTMA siRNA can accelerate apoptotic progression in cells treated with those apoptosis inducers. Therefore PTMA siRNA may have potential applications as an adjuvant in cancer chemotherapy.
Insights
MicroRNA-1 (miR-1) induces apoptosis in nasopharyngeal carcinoma cells by targeting the PTMA gene. This finding offers a model for microRNA-induced apoptosis and suggests PTMA siRNA as a potential adjuvant for cancer chemotherapy.
Area of Science:
- Molecular Biology
- Cell Biology
- Cancer Research
Background:
- MicroRNA-1 (miR-1) is utilized as a positive control in microRNA research.
- Transfection of nasopharyngeal carcinoma cells with miR-1 induced a visible apoptotic process.
- Investigated the underlying mechanisms of miR-1-mediated apoptosis.
Purpose of the Study:
- To confirm miR-1's role in inducing apoptosis.
- To identify direct gene targets of miR-1 involved in apoptosis.
- To assess the role of the PTMA gene in miR-1-induced apoptosis.
Main Methods:
- Confirmed apoptosis using Annexin V, TUNEL staining, and caspase assays.
- Analyzed microRNA and pathway databases, and gene expression microarrays.
- Validated miR-1 targets via qRT-PCR and luciferase reporter assays.
- Utilized PTMA siRNA to evaluate the target gene's role in apoptosis.
Main Results:
- miR-1 transfection induced apoptosis in nasopharyngeal carcinoma cells and cell lines with low endogenous miR-1 levels.
- Apoptosis was not induced in cell lines with high endogenous miR-1 levels.
- miR-1 was confirmed to directly target the PTMA gene.
- PTMA siRNA and miR-1 accelerated apoptosis in cells treated with apoptosis inducers.
Conclusions:
- Exogenous miR-1 expression triggers apoptosis in various cell lines, establishing a model for microRNA-induced apoptosis.
- PTMA is identified as a miR-1 target gene crucial for miR-1-mediated apoptosis.
- PTMA siRNA demonstrated potential as an adjuvant in cancer chemotherapy by accelerating apoptosis induced by chemotherapeutic drugs.
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