Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Yeast Signaling01:28

Yeast Signaling

Yeasts are single-celled organisms, but unlike bacteria, they are eukaryotes (cells with a nucleus). Cell signaling in yeast is similar to signaling in other eukaryotic cells. A ligand, such as a protein or a small molecule released from a yeast cell, attaches to a receptor on the cell surface. The binding stimulates second-messenger kinases to activate or inactivate transcription factors that further regulate gene expression. Many of the yeast intracellular signaling cascades have similar...
Microbial Fermentation01:23

Microbial Fermentation

Fermentation is a crucial anaerobic metabolic process that enables microbes to derive energy from sugar without relying on oxygen or an electron transport chain. This process is fundamental to various biological and industrial applications and is classified based on the metabolic products generated.Role of Pyruvate in FermentationPyruvate and its derivatives serve as key electron acceptors in fermentative pathways. The oxidation of NADH to regenerate NAD+ is essential for the continuation of...
What is Metabolism?00:52

What is Metabolism?

Overview
Overview of Protein Metabolism01:21

Overview of Protein Metabolism

Proteins are broken down into amino acids during digestion. Unlike fats and carbohydrates, which are stored for later use, proteins are not. Instead, amino acids are either used to produce ATP through oxidation or contribute to the creation of new proteins for the growth and repair of the body. Any surplus amino acids from the diet are converted into glucose or triglycerides rather than excreted.
Amino acids play various roles in the body once they are absorbed into cells. They are restructured...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Fluxomics in precision nutrition: integrating dynamic metabolic profiling with multiomics.

Nutrition (Burbank, Los Angeles County, Calif.)·2026
Same author

Identification of High-Performing Blood Metabolite Biomarkers of Lung Cancer in a Chinese Population.

Phenomics (Cham, Switzerland)·2026
Same author

Automated, targeted, NMR spectral profiling of human breast milk.

Metabolomics : Official journal of the Metabolomic Society·2026
Same author

Serum metabolomic profiling reveals LysoPC/PC depletion as a potential biomarker to detect avian reoviral infection in neonatal broiler chickens.

Frontiers in cellular and infection microbiology·2026
Same author

The NMR Exchange Format (NEF): Specification and Applications.

bioRxiv : the preprint server for biology·2026
Same author

A scoring system for validity assessment of biomarkers of food intake.

Critical reviews in food science and nutrition·2026
Same journal

Correction to 'scSuperAnnotator: A platform for benchmarking comparison and visualizing automated cellular annotation methods for scRNA-seq data'.

Nucleic acids research·2026
Same journal

Correction to 'Differentiable partition function calculation for RNA'.

Nucleic acids research·2026
Same journal

Deployment of non-canonical splicing in tunicate genomes is mediated by divergent U2AF function and changing m6A modification in U1 and U6 snRNA.

Nucleic acids research·2026
Same journal

Bacillus subtilis DnaB forms multiple protein-protein interactions essential for DNA replication initiation.

Nucleic acids research·2026
Same journal

Multiple forms of protein-protein and DNA binding are exhibited by BrxC from the BREX phage restriction system.

Nucleic acids research·2026
Same journal

Biosynthesis of glycosylated 5-hydroxycytosine in the DNA of diverse viruses.

Nucleic acids research·2026
See all related articles

Related Experiment Video

Updated: May 27, 2026

Quantitative Metabolomics of Saccharomyces Cerevisiae Using Liquid Chromatography Coupled with Tandem Mass Spectrometry
07:25

Quantitative Metabolomics of Saccharomyces Cerevisiae Using Liquid Chromatography Coupled with Tandem Mass Spectrometry

Published on: January 5, 2021

YMDB: the Yeast Metabolome Database.

Timothy Jewison1, Craig Knox, Vanessa Neveu

  • 1Department of Computing Science, Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E8, Canada.

Nucleic Acids Research
|November 9, 2011
PubMed
Summary
This summary is machine-generated.

The Yeast Metabolome Database (YMDB) offers comprehensive data on Saccharomyces cerevisiae metabolites, genes, and pathways. It integrates literature and experimental data, aiding yeast research and industrial applications.

More Related Videos

Workflow Based on the Combination of Isotopic Tracer Experiments to Investigate Microbial Metabolism of Multiple Nutrient Sources
12:47

Workflow Based on the Combination of Isotopic Tracer Experiments to Investigate Microbial Metabolism of Multiple Nutrient Sources

Published on: January 22, 2018

Quantitative Analysis of the Cellular Lipidome of Saccharomyces Cerevisiae Using Liquid Chromatography Coupled with Tandem Mass Spectrometry
08:56

Quantitative Analysis of the Cellular Lipidome of Saccharomyces Cerevisiae Using Liquid Chromatography Coupled with Tandem Mass Spectrometry

Published on: March 8, 2020

Related Experiment Videos

Last Updated: May 27, 2026

Quantitative Metabolomics of Saccharomyces Cerevisiae Using Liquid Chromatography Coupled with Tandem Mass Spectrometry
07:25

Quantitative Metabolomics of Saccharomyces Cerevisiae Using Liquid Chromatography Coupled with Tandem Mass Spectrometry

Published on: January 5, 2021

Workflow Based on the Combination of Isotopic Tracer Experiments to Investigate Microbial Metabolism of Multiple Nutrient Sources
12:47

Workflow Based on the Combination of Isotopic Tracer Experiments to Investigate Microbial Metabolism of Multiple Nutrient Sources

Published on: January 22, 2018

Quantitative Analysis of the Cellular Lipidome of Saccharomyces Cerevisiae Using Liquid Chromatography Coupled with Tandem Mass Spectrometry
08:56

Quantitative Analysis of the Cellular Lipidome of Saccharomyces Cerevisiae Using Liquid Chromatography Coupled with Tandem Mass Spectrometry

Published on: March 8, 2020

Area of Science:

  • Metabolomics
  • Systems Biology
  • Biotechnology

Background:

  • Saccharomyces cerevisiae is a crucial model organism and industrial biofactory.
  • Existing databases lack comprehensive metabolomic data for yeast.
  • Standardized metabolomic data is essential for biological and industrial research.

Purpose of the Study:

  • To develop and present the Yeast Metabolome Database (YMDB).
  • To consolidate literature-derived and experimental metabolomic data for S. cerevisiae.
  • To provide advanced search and data retrieval tools for yeast metabolomics.

Main Methods:

  • Compiled data from scientific literature, electronic databases, and internal experimental analyses.
  • Integrated Mass Spectrometry (MS) and Nuclear Magnetic Resonance (NMR) metabolomic data.
  • Developed a database structure with over 80 data fields per metabolite.

Main Results:

  • The YMDB contains over 2000 metabolites linked to 995 genes/proteins.
  • Includes experimental intracellular and extracellular metabolite concentrations.
  • Provides thousands of NMR and MS spectra for reference metabolites.

Conclusions:

  • The YMDB serves as a valuable resource for yeast metabolomics research.
  • Facilitates research in yeast biology, systems biology, and industrial fermentation.
  • Supports applications in the beer, wine, and spirit industries.