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Updated: May 27, 2026

A Chromatin Immunoprecipitation Assay to Identify Novel NFAT2 Target Genes in Chronic Lymphocytic Leukemia
Published on: December 4, 2018
Restricted heterochromatin formation links NFATc2 repressor activity with growth promotion in pancreatic cancer
Sandra Baumgart1, Elisabeth Glesel, Garima Singh
1Signaling and Transcription Laboratory, Department of Gastroenterology, Philipps-University of Marburg, Marburg, Germany.
Background & Aims:
Transcriptional silencing of the p15(INK4b) tumor suppressor pathway overcomes cellular protection against unrestrained proliferation in cancer. Here we show a novel pathway involving the oncogenic transcription factor nuclear factor of activated T cells (NFAT) c2 targeting a p15(INK4b)-mediated failsafe mechanism to promote pancreatic cancer tumor growth.
Methods:
Immunohistochemistry, real-time polymerase chain reaction, immunoblotting, and immunofluorescence microscopy were used for expression studies. Cancer growth was assessed in vitro by [(3)H]thymidine incorporation, colony formation assays, and in vivo using xenograft tumor models. Protein-protein interactions, promoter regulation, and local histone modifications were analyzed by immunoprecipitation, DNA pull-down, reporter, and chromatin immunoprecipitation assays.
Results:
Our study uncovered induction of NFATc2 in late-stage pancreatic intraepithelial neoplasia lesions with increased expression in tumor cell nuclei of advanced cancers. In the nucleus, NFATc2 targets the p15(INK4b) promoter for inducible heterochromatin formation and silencing. NFATc2 binding to its cognate promoter site induces stepwise recruitment of the histone methyltransferase Suv39H1, causes local H3K9 trimethylation, and allows docking of heterochromatin protein HP1γ to the repressor complex. Conversely, inactivation of NFATc2 disrupts this repressor complex assembly and local heterochromatin formation, resulting in restoration of p15(INK4b) expression and inhibition of pancreatic cancer growth in vitro and in vivo.
Conclusions:
Here we describe a novel mechanism for NFATc2-mediated gene regulation and identify a functional link among its repressor activity, the silencing of the suppressor pathway p15(INK4b), and its pancreatic cancer growth regulatory functions. Thus, we provide evidence that inactivation of oncogenic NFATc2 might be an attractive strategy in treatment of pancreatic cancer.
Insights
Nuclear factor of activated T cells c2 (NFATc2) promotes pancreatic cancer by silencing the p15(INK4b) tumor suppressor. Inhibiting NFATc2 restores p15(INK4b) expression, halting tumor growth, suggesting a new therapeutic strategy.
Area of Science:
- Molecular Oncology
- Cancer Biology
- Gene Regulation
Background:
- Transcriptional silencing of the p15(INK4b) tumor suppressor pathway is crucial for overcoming cellular proliferation limits in cancer.
- A novel pathway involving oncogenic nuclear factor of activated T cells c2 (NFATc2) targets the p15(INK4b) failsafe mechanism, promoting pancreatic cancer growth.
Purpose of the Study:
- To elucidate the novel mechanism by which NFATc2 promotes pancreatic cancer.
- To identify the functional link between NFATc2 repressor activity, p15(INK4b) silencing, and pancreatic cancer progression.
- To evaluate the therapeutic potential of targeting NFATc2 in pancreatic cancer treatment.
Main Methods:
- Utilized immunohistochemistry, real-time PCR, immunoblotting, and immunofluorescence microscopy for expression studies.
- Assessed cancer growth in vitro using [(3)H]thymidine incorporation and colony formation assays, and in vivo using xenograft models.
- Analyzed protein-protein interactions, promoter regulation, and histone modifications via immunoprecipitation, DNA pull-down, reporter assays, and chromatin immunoprecipitation.
Main Results:
- NFATc2 was induced in late-stage pancreatic intraepithelial neoplasia and localized to tumor cell nuclei in advanced cancers.
- NFATc2 targets the p15(INK4b) promoter, inducing heterochromatin formation and silencing via recruitment of Suv39H1 and HP1γ.
- Inactivation of NFATc2 disrupted this repressor complex, restored p15(INK4b) expression, and inhibited pancreatic cancer growth both in vitro and in vivo.
Conclusions:
- A novel mechanism of NFATc2-mediated gene regulation was described, linking its repressor activity to p15(INK4b) silencing in pancreatic cancer.
- NFATc2 plays a critical role in regulating pancreatic cancer growth.
- Inactivation of oncogenic NFATc2 represents a promising therapeutic strategy for pancreatic cancer treatment.
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