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Published on: August 5, 2020
Phytozome: a comparative platform for green plant genomics
David M Goodstein1, Shengqiang Shu, Russell Howson
1US Department of Energy, Joint Genome Institute, Walnut Creek, CA 94598, USA. dmgoodstein@lbl.gov
Nucleic Acids Research
|November 24, 2011
Summary
Phytozome is a new online hub for plant genome data, offering evolutionary insights and comparative genomics tools for 25 plant species. This resource aids researchers in analyzing plant genomic data and linking model systems to other important plants.
Area of Science:
- Plant genomics
- Bioinformatics
- Evolutionary biology
Background:
- The rapid increase in sequenced plant genomes necessitates advanced data interaction tools.
- Next-generation sequencing technologies have accelerated the generation of plant genomic data.
Purpose of the Study:
- To develop Phytozome, a comprehensive comparative hub for plant genome and gene family data.
- To provide access to evolutionary history, gene structure, and genome organization for multiple plant species.
Main Methods:
- Development of a web portal and comprehensive plant genome database.
- Integration of data from 25 sequenced plant genomes, including land plants and algae.
- Implementation of comparative genomics tools for sequence, gene structure, and genome organization analysis.
Main Results:
- Phytozome provides access to genomic and functional annotation data for 25 plant species.
- The platform offers insights into the evolutionary history of plant genes and gene families.
- Comparative genomics tools are available to link model systems with plants of economic and ecological importance.
Conclusions:
- Phytozome serves as a valuable resource for the plant science community.
- The hub facilitates comparative genomics and enhances understanding of plant evolution.
- It empowers researchers to analyze large-scale plant genomic data effectively.
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