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Updated: May 27, 2026

Assessment of DNA Double Strand Break Repair Activity Using High-throughput and Quantitative Luminescence-Based Reporter Assays
Published on: June 14, 2024
The automated FADU-assay, a potential high-throughput in vitro method for early screening of DNA breakage
María Moreno-Villanueva1, Tobias Eltze, Dirk Dressler
1Molecular Toxicology Group, Department of Biology, University of Konstanz, Germany.
Abstract:
Genotoxicity tests are essential to identify compounds that have a potential to compromise not only the environment but also human and animal health, including compounds that increase the risk of cancer. At present, no single test is capable of detecting all types of genotoxic effects; therefore a battery of in vitro and, if positive, in vivo tests is necessary to determine the genotoxicity of a substance. However, the respective specificities of current assays have been criticized for their high percentage of false positive results. We recently published an automated version of the "Fluorimetric detection of Alkaline DNA Unwinding" (FADU) assay for measuring DNA strand breaks in human peripheral blood mononuclear cells or in cell lines. Using this new technology we show detection of DNA strand breaks in cells treated with several compounds known to induce DNA strand breaks by various mechanisms. We also tested toxic compounds that were not expected to induce DNA strand breaks; these were negative in the assay as expected. Finally, we included zinc oxide nanoparticles of high production volume to explore further fields of potential FADU applications. The main advantages of this assay are high reproducibility, easy handling, lack of operator bias, high-throughput, speed, and low cost.
Insights
This study introduces an automated Fluorimetric detection of Alkaline DNA Unwinding (FADU) assay for genotoxicity testing. The FADU assay accurately detects DNA strand breaks, offering a reliable method for assessing compound safety.
Area of Science:
- Toxicology
- Molecular Biology
- Environmental Health
Background:
- Genotoxicity testing is crucial for identifying environmental and health risks, including carcinogens.
- Current genotoxicity assays face challenges with specificity and high false positive rates.
- A comprehensive battery of tests is needed due to the inability of single assays to detect all genotoxic effects.
Purpose of the Study:
- To present an automated Fluorimetric detection of Alkaline DNA Unwinding (FADU) assay for genotoxicity assessment.
- To evaluate the FADU assay's capability in detecting DNA strand breaks induced by various compounds.
- To explore the application of the FADU assay for novel substances like zinc oxide nanoparticles.
Main Methods:
- Development and implementation of an automated Fluorimetric detection of Alkaline DNA Unwinding (FADU) assay.
- Testing the assay using human peripheral blood mononuclear cells and cell lines.
- Exposure of cells to known genotoxic compounds, non-genotoxic compounds, and zinc oxide nanoparticles.
Main Results:
- The automated FADU assay successfully detected DNA strand breaks in cells treated with known genotoxic agents.
- Compounds not expected to induce DNA strand breaks yielded negative results, confirming assay specificity.
- The assay demonstrated potential for evaluating novel materials, such as zinc oxide nanoparticles.
Conclusions:
- The automated FADU assay provides a reproducible, high-throughput, and cost-effective method for genotoxicity testing.
- This assay offers advantages in handling, operator bias reduction, and speed compared to traditional methods.
- The FADU assay is a valuable tool for assessing DNA damage and potential health risks from various chemical exposures.
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