Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Electron Microscope Tomography and Single-particle Reconstruction01:07

Electron Microscope Tomography and Single-particle Reconstruction

Transmission electron microscopy (TEM) can be used to determine the 3D structure of biological samples with the help of techniques such as electron microscope tomography and single-particle reconstruction. While single-particle reconstruction can examine macromolecules and macromolecular complexes in vitro conditions only, tomography permits the study of cell components or small cells in vivo.
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...
Transmission Electron Microscopy01:15

Transmission Electron Microscopy

In 1931, physicist Ernst Ruska—building on the idea that magnetic fields can direct an electron beam just as lenses can direct a beam of light in an optical microscope—developed the first prototype of the electron microscope. This development led to the development of the field of electron microscopy. In the transmission electron microscope (TEM), electrons are produced by a hot tungsten element and accelerated by a potential difference in an electron gun, which gives them up to 400 keV in...
Super-resolution Fluorescence Microscopy01:37

Super-resolution Fluorescence Microscopy

Super-resolution fluorescence microscopy (SRFM) provides a better resolution than conventional fluorescence microscopy by reducing the point spread function (PSF). PSF is the light intensity distribution from a point that causes it to appear blurred. Due to PSF, each fluorescing point appears bigger than its actual size, and it is the PSF interference of nearby fluorophores that causes the blurred image. Various approaches to achieving higher resolution through SRFM have recently been developed.
Overview of Electron Microscopy01:25

Overview of Electron Microscopy

The wavelengths of visible light ultimately limit the maximum theoretical resolution of images created by light microscopes. Most light microscopes can only magnify 1000X, and a few can magnify up to 1500X. Electrons, like electromagnetic radiation, can behave like waves, but with wavelengths of 0.005 nm, they produce significantly greater resolution up to 0.05 nm as compared to 500 nm for visible light. An electron microscope (EM) can create a sharp image that is magnified up to 2,000,000X.
Three-Dimensional Microscopy in Microbiology01:28

Three-Dimensional Microscopy in Microbiology

Three-dimensional imaging techniques are essential in cell biology, allowing researchers to visualize intricate cellular structures with high resolution. Two prominent methods, Differential Interference Contrast Microscopy (DIC) and Confocal Scanning Laser Microscopy (CSLM), provide distinct advantages for imaging live and thick specimens, respectively.Differential Interference Contrast MicroscopyDIC microscopy enhances contrast in transparent, unstained samples by converting phase...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

ColorSTEM: An easy and convenient approach to Multicolor Electron Microscopy of Labeled Biological Specimens.

bioRxiv : the preprint server for biology·2025
Same author

Quality control in the Netherlands; todays practices and starting points for guidance and future research.

Clinical chemistry and laboratory medicine·2024
Same author

New rabies viral resources for multi-scale neural circuit mapping.

Molecular psychiatry·2024
Same author

The effect of nanochannel length on in situ loading times of diffusion-propelled nanoparticles in liquid cell electron microscopy.

Ultramicroscopy·2023
Same author

Fe-TAMLs as a new class of small molecule peroxidase probes for correlated light and electron microscopy.

bioRxiv : the preprint server for biology·2023
Same author

Automated calculations for computing the sample-limited spatial resolution in (scanning) transmission electron microscopy.

Ultramicroscopy·2022

Related Experiment Video

Updated: May 26, 2026

Preparation and Observation of Thick Biological Samples by Scanning Transmission Electron Tomography
08:04

Preparation and Observation of Thick Biological Samples by Scanning Transmission Electron Tomography

Published on: March 12, 2017

Optimized deconvolution for maximum axial resolution in three-dimensional aberration-corrected scanning transmission

Ranjan Ramachandra1, Niels de Jonge

  • 1Vanderbilt University School of Medicine, Department of Molecular Physiology and Biophysics, Nashville, TN 37232-0615, USA.

Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada
|December 14, 2011
PubMed
Summary

Iterative deconvolution of 3D scanning transmission electron microscopy (STEM) datasets enhances axial resolution for gold nanoparticles. This method improves 3D localization but may reduce lateral nanoparticle size.

More Related Videos

Scanning Transmission Electron Microscopy Tomography in Virology: 3D Imaging of High-pressure Frozen, Freeze-substituted Samples
09:17

Scanning Transmission Electron Microscopy Tomography in Virology: 3D Imaging of High-pressure Frozen, Freeze-substituted Samples

Published on: August 6, 2025

Related Experiment Videos

Last Updated: May 26, 2026

Preparation and Observation of Thick Biological Samples by Scanning Transmission Electron Tomography
08:04

Preparation and Observation of Thick Biological Samples by Scanning Transmission Electron Tomography

Published on: March 12, 2017

Scanning Transmission Electron Microscopy Tomography in Virology: 3D Imaging of High-pressure Frozen, Freeze-substituted Samples
09:17

Scanning Transmission Electron Microscopy Tomography in Virology: 3D Imaging of High-pressure Frozen, Freeze-substituted Samples

Published on: August 6, 2025

Area of Science:

  • Materials Science
  • Nanotechnology
  • Electron Microscopy

Background:

  • Accurate 3D structural information is crucial for nanomaterials.
  • Scanning transmission electron microscopy (STEM) provides high-resolution imaging.
  • Improving axial resolution in 3D STEM datasets is a significant challenge.

Purpose of the Study:

  • To enhance the axial resolution of 3D STEM datasets of gold nanoparticles.
  • To investigate the effectiveness of iterative blind deconvolution for improving 3D localization.
  • To assess the impact of membrane thickness and deconvolution iterations on image quality and resolution.

Main Methods:

  • Recording 3D datasets of gold nanoparticles using aberration-corrected STEM.
  • Applying iterative blind deconvolution with two different point spread functions.
  • Testing membranes of varying thicknesses to analyze beam broadening effects.

Main Results:

  • Iterative deconvolution effectively reduced imaging noise.
  • Axial resolution improved with increased deconvolution iterations, reaching up to 8 nm.
  • Axial resolution enhancement ranged from 4 to 6 times, depending on the dataset.
  • Excessive iterations led to a reduction in the lateral size of nanoparticles.

Conclusions:

  • Iterative deconvolution is a powerful technique for enhancing axial resolution in 3D STEM.
  • The optimized deconvolution procedure is best suited for applications focusing on 3D nanoparticle localization.
  • Further research may explore balancing axial resolution enhancement with preservation of lateral dimensions.