The SNF2-like helicase HELLS mediates E2F3-dependent transcription and cellular transformation
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Updated: May 26, 2026

Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis
Published on: June 27, 2020
Björn von Eyss1, Jonas Maaskola, Sebastian Memczak
1Cancer Research, Max-Delbrück-Centrum für Molekulare Medizin (MDC), Berlin, Germany.
Abstract:
The activating E2F-transcription factors are best known for their dependence on the Retinoblastoma protein and their role in cellular proliferation. E2F3 is uniquely amplified in specific human tumours where its expression is inversely correlated with the survival of patients. Here, E2F3B interaction partners were identified by mass spectrometric analysis. We show that the SNF2-like helicase HELLS interacts with E2F3A in vivo and cooperates with its oncogenic functions. Depletion of HELLS severely perturbs the induction of E2F-target genes, hinders cell-cycle re-entry and growth. Using chromatin immmunoprecipitation coupled to sequencing, we identified genome-wide targets of HELLS and E2F3A/B. HELLS binds promoters of active genes, including the trithorax-related MLL1, and co-regulates E2F3-dependent genes. Strikingly, just as E2F3, HELLS is overexpressed in human tumours including prostate cancer, indicating that either factor may contribute to the malignant progression of tumours. Our work reveals that HELLS is important for E2F3 in tumour cell proliferation.
Insights
The helicase HELLS protein interacts with E2F3A and supports its oncogenic functions in human tumors. Depleting HELLS hinders tumor cell proliferation, highlighting its role in cancer progression.
Area of Science:
- Molecular Biology
- Oncology
- Gene Regulation
Background:
- E2F transcription factors regulate cell proliferation and are linked to cancer.
- E2F3 amplification in tumors correlates with poor patient survival.
- The Retinoblastoma protein (Rb) typically controls E2F activity.
Purpose of the Study:
- To identify E2F3B interaction partners.
- To investigate the role of the helicase HELLS in E2F3-mediated oncogenesis.
- To determine the genome-wide targets of HELLS and E2F3.
Main Methods:
- Mass spectrometry to identify protein interactions.
- In vivo interaction studies between HELLS and E2F3A.
- Chromatin immunoprecipitation coupled with sequencing (ChIP-seq) for genome-wide target identification.
- Gene silencing techniques to assess HELLS function.
Main Results:
- HELLS (SNF2-like helicase) interacts with E2F3A.
- HELLS depletion impairs E2F-target gene induction, cell-cycle re-entry, and tumor cell growth.
- HELLS binds active gene promoters, including MLL1, and co-regulates E2F3 targets.
- Both E2F3 and HELLS are overexpressed in human tumors, including prostate cancer.
Conclusions:
- HELLS cooperates with E2F3A in promoting oncogenic functions.
- HELLS is crucial for E2F3-driven tumor cell proliferation.
- The overexpression of HELLS and E2F3 in tumors suggests their contribution to malignant progression.
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