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Updated: May 26, 2026

Studying TGF-β Signaling and TGF-β-induced Epithelial-to-mesenchymal Transition in Breast Cancer and Normal Cells
Published on: October 27, 2020
A poised chromatin platform for TGF-β access to master regulators
Qiaoran Xi1, Zhanxin Wang, Alexia-Ileana Zaromytidou
1Cancer Biology and Genetics Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA.
Abstract:
Specific chromatin marks keep master regulators of differentiation silent yet poised for activation by extracellular signals. We report that nodal TGF-β signals use the poised histone mark H3K9me3 to trigger differentiation of mammalian embryonic stem cells. Nodal receptors induce the formation of companion Smad4-Smad2/3 and TRIM33-Smad2/3 complexes. The PHD-Bromo cassette of TRIM33 facilitates binding of TRIM33-Smad2/3 to H3K9me3 and H3K18ac on the promoters of mesendoderm regulators Gsc and Mixl1. The crystal structure of this cassette, bound to histone H3 peptides, illustrates that PHD recognizes K9me3, and Bromo binds an adjacent K18ac. The interaction between TRIM33-Smad2/3 and H3K9me3 displaces the chromatin-compacting factor HP1γ, making nodal response elements accessible to Smad4-Smad2/3 for Pol II recruitment. In turn, Smad4 increases K18 acetylation to augment TRIM33-Smad2/3 binding. Thus, nodal effectors use the H3K9me3 mark as a platform to switch master regulators of stem cell differentiation from the poised to the active state.
Insights
Nodal signals activate embryonic stem cell differentiation by targeting the poised histone mark H3K9me3. This interaction recruits key proteins, enabling the activation of master regulators for cell fate decisions.
Area of Science:
- Epigenetics
- Stem Cell Biology
- Molecular Signaling
Background:
- Master regulators of differentiation are silenced by specific chromatin marks, remaining poised for activation.
- Extracellular signals, such as nodal TGF-β, can trigger the transition from a poised to an active state.
Purpose of the Study:
- To elucidate the mechanism by which nodal TGF-β signals trigger differentiation in mammalian embryonic stem cells.
- To investigate the role of specific histone marks and protein complexes in activating differentiation regulators.
Main Methods:
- Analysis of protein-DNA interactions using crystal structures.
- Investigated the binding of TRIM33-Smad2/3 complexes to histone peptides.
- Studied the displacement of HP1γ and recruitment of Pol II.
Main Results:
- Nodal signals utilize the poised histone mark H3K9me3 to initiate stem cell differentiation.
- The TRIM33 PHD-Bromo cassette binds to H3K9me3 and H3K18ac, facilitating access to differentiation regulators.
- This interaction displaces HP1γ, allowing Smad4-Smad2/3 recruitment and Pol II activation, with Smad4 enhancing H3K18 acetylation.
Conclusions:
- Nodal signaling employs H3K9me3 as a platform to activate poised master regulators of stem cell differentiation.
- The interplay between histone modifications and protein complexes is crucial for dynamic changes in chromatin accessibility and gene activation during differentiation.
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