Activity of the mycobacterial proteasomal ATPase Mpa is reversibly regulated by pupylation

Cyrille L Delley1, Frank Striebel, Franziska M Heydenreich

  • 1Institute of Molecular Biology and Biophysics, ETH Zurich, 8093 Zurich, Switzerland.

Insights

Pupylation, a bacterial protein modification, inactivates the Mpa enzyme in Mycobacterium tuberculosis. This reversible process allows controlled protein degradation via the proteasome.

Area of Science:

  • Microbiology
  • Biochemistry
  • Molecular Biology

Background:

  • Pupylation is a bacterial post-translational modification involving prokaryotic ubiquitin-like protein (Pup).
  • In Mycobacterium tuberculosis, the proteasome-interacting ATPase Mpa recognizes and degrades pupylated substrates.
  • Mpa itself is a target for pupylation, suggesting a regulatory mechanism.

Purpose of the Study:

  • To investigate the effect of Mpa pupylation on its function.
  • To elucidate the mechanism of Mpa inactivation and reactivation.
  • To understand the role of Pup ligase PafA and depupylase Dop in regulating Mpa activity.

Main Methods:

  • Investigating Mpa pupylation by PafA using biochemical assays.
  • Assessing the impact of Mpa pupylation on its interaction with the proteasome.
  • Analyzing the effect of depupylation by Dop on Mpa activity.
  • Studying the oligomeric state of Mpa under different conditions.

Main Results:

  • PafA predominantly produces monopupylated Mpa on a C-terminal lysine residue.
  • Pupylated Mpa is functionally inactive, unable to associate with the proteasome.
  • Mpa inactivation is accelerated by Pup- and ATPase-driven deoligomerization.
  • Mpa activity is chemically and functionally reversible upon depupylation by Dop.

Conclusions:

  • Mpa pupylation serves as a mechanism for reversible inactivation of the proteasome-interacting ATPase.
  • This reversible modification allows for precise control over Pup-mediated proteasomal degradation.
  • The interplay between PafA, Pup, and Dop provides a dynamic regulatory system for Mpa function.

Related Concept Videos

Covalently Linked Protein Regulators02:04

Covalently Linked Protein Regulators

Proteins can undergo many types of post-translational modifications, often in response to changes in their environment. These modifications play an important role in the function and stability of these proteins. Covalently linked molecules include functional groups, such as methyl, acetyl, and phosphate groups, and also small proteins, such as ubiquitin. There are around 200 different types of covalent regulators that have been identified.
These groups modify specific amino acids in a protein.
Regulated Protein Degradation02:58

Regulated Protein Degradation

It is vital to regulate the activity of enzymatic as well as non-enzymatic proteins inside the cell. This can be achieved either through creating a balance between their rate of synthesis and degradation or regulating the intrinsic activity of the protein. Both these regulation mechanisms play an essential role in the normal functioning of cells.
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
Abnormal Proliferation02:23

Abnormal Proliferation

Under normal conditions, most adult cells remain in a non-proliferative state unless stimulated by internal or external factors to replace lost cells. Abnormal cell proliferation is a condition in which the cell's growth exceeds and is uncoordinated with normal cells. In such situations, cell division persists in the same excessive manner even after cessation of the stimuli, leading to persistent tumors. The tumor arises from the damaged cells that replicate to pass the damage to the daughter...
The Proteasome Structure01:17

The Proteasome Structure

The ubiquitin-proteasome pathway is a well-known mechanism utilized by eukaryotic cells to remove cytoplasmic proteins that are misfolded, damaged, or no longer needed. In this pathway, the protein that needs to be eliminated undergoes a process called ubiquitination, where a chain of ubiquitin molecules is attached to the 48th lysine residue of the target protein. This ubiquitin modification helps the proteasome distinguish between a target protein and a healthy protein.
The proteasome is an...
The Proteasome01:13

The Proteasome

Eukaryotic cells can degrade proteins through several pathways. One of the most important among these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3 (ubiquitin...
The Proteasome02:18

The Proteasome

Eukaryotic cells can degrade proteins through several pathways. One of the most important amongst these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...