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Updated: May 25, 2026

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
Suppression of Klotho expression by protein-bound uremic toxins is associated with increased DNA methyltransferase
Chiao-Yin Sun1, Shih-Chung Chang, Mai-Szu Wu
1School of Medicine, Chang Gung University, Taoyuan, Taiwan.
Abstract:
The expression of the renoprotective antiaging gene Klotho is decreased in uremia. Recent studies suggest that Klotho may be a tumor suppressor, and its expression may be repressed by DNA hypermethylation in cancer cells. Here we investigated the effects and possible mechanisms by which Klotho expression is regulated during uremia in uninephrectomized B-6 mice given the uremic toxins indoxyl sulfate or p-cresyl sulfate. Cultured human renal tubular HK2 cells treated with these toxins were used as an in vitro model. Injections of indoxyl sulfate or p-cresyl sulfate increased their serum concentrations, kidney fibrosis, CpG hypermethylation of the Klotho gene, and decreased Klotho expression in renal tubules of these mice. The expression of DNA methyltransferases 1, 3a, and 3b isoforms in HK2 cells treated with indoxyl sulfate or p-cresyl sulfate was significantly increased. Specific inhibition of DNA methyltransferase isoform 1 by 5-aza-2'-deoxycytidine caused demethylation of the Klotho gene and increased Klotho expression in vitro. Thus, inhibition of Klotho gene expression by uremic toxins correlates with gene hypermethylation, suggesting that epigenetic modification of specific genes by uremic toxins may be an important pathological mechanism of disease.
Insights
Uremic toxins like indoxyl sulfate and p-cresyl sulfate decrease the renoprotective Klotho gene expression by causing DNA hypermethylation. This epigenetic modification in the kidneys suggests a new mechanism in uremia-related diseases.
Area of Science:
- Nephrology
- Epigenetics
- Molecular Biology
Background:
- Klotho, a renoprotective and antiaging gene, shows reduced expression in uremia.
- Klotho may function as a tumor suppressor, with its expression potentially repressed by DNA hypermethylation in cancer.
Purpose of the Study:
- To investigate how uremic toxins regulate Klotho gene expression in a mouse model of uremia.
- To explore the role of DNA hypermethylation and DNA methyltransferases in Klotho gene repression by uremic toxins.
Main Methods:
- Uninephrectomized B-6 mice were administered indoxyl sulfate or p-cresyl sulfate.
- Cultured human renal tubular HK2 cells were used as an in vitro model and treated with these toxins.
- DNA methylation, Klotho expression, and DNA methyltransferase (DNMT) expression levels were analyzed.
- The effect of DNMT inhibition using 5-aza-2'-deoxycytidine was assessed.
Main Results:
- Uremic toxins increased serum concentrations, kidney fibrosis, Klotho gene CpG hypermethylation, and decreased Klotho expression in mouse kidneys.
- Indoxyl sulfate and p-cresyl sulfate significantly increased DNMT 1, 3a, and 3b expression in HK2 cells.
- Inhibition of DNMT1 by 5-aza-2'-deoxycytidine led to Klotho gene demethylation and increased Klotho expression in vitro.
Conclusions:
- Uremic toxins inhibit Klotho gene expression through DNA hypermethylation, indicating an epigenetic mechanism.
- Epigenetic modification of genes by uremic toxins may be a critical pathological pathway in kidney disease.
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