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Updated: May 25, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
The endoperoxide ascaridol shows strong differential cytotoxicity in nucleotide excision repair-deficient cells
Rashda Abbasi1, Thomas Efferth, Christine Kuhmann
1Division of Epigenomics and Cancer Risk Factors, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany.
Abstract:
Targeting synthetic lethality in DNA repair pathways has become a promising anti-cancer strategy. However little is known about such interactions with regard to the nucleotide excision repair (NER) pathway. Therefore, cell lines with a defect in the NER genes ERCC6 or XPC and their normal counterparts were screened with 53 chemically defined phytochemicals isolated from plants used in traditional Chinese medicine for differential cytotoxic effects. The screening revealed 12 drugs that killed NER-deficient cells more efficiently than proficient cells. Five drugs were further analyzed for IC(50) values, effects on cell cycle distribution, and induction of DNA damage. Ascaridol was the most effective compound with a difference of >1000-fold in resistance between normal and NER-deficient cells (IC(50) values for cells with deficiency in ERCC6: 0.15μM, XPC: 0.18μM, and normal cells: >180μM). NER-deficiency combined with ascaridol treatment led to G2/M-phase arrest, an increased percentage of subG1 cells, and a substantially higher DNA damage induction. These results were confirmed in a second set of NER-deficient and -proficient cell lines with isogenic background. Finally, ascaridol was characterized for its ability to generate oxidative DNA damage. The drug led to a dose-dependent increase in intracellular levels of reactive oxygen species at cytotoxic concentrations, but only NER-deficient cells showed a strongly induced amount of 8-oxodG sites. In summary, ascaridol is a cytotoxic and DNA-damaging compound which generates intracellular reactive oxidative intermediates and which selectively affects NER-deficient cells. This could provide a new therapeutic option to treat cancer cells with mutations in NER genes.
Insights
Ascaridol selectively kills cancer cells with DNA repair defects. This compound, derived from traditional Chinese medicine, shows potent anti-cancer effects by inducing DNA damage in nucleotide excision repair-deficient cells.
Area of Science:
- Oncology
- Molecular Biology
- Pharmacology
Background:
- Synthetic lethality targeting DNA repair pathways is a key anti-cancer strategy.
- The role of nucleotide excision repair (NER) pathway interactions in synthetic lethality remains underexplored.
Purpose of the Study:
- To screen phytochemicals for differential cytotoxicity against NER-deficient cells.
- To identify novel anti-cancer agents targeting NER pathway defects.
Main Methods:
- Screening of 53 phytochemicals against ERCC6/XPC-deficient and normal cell lines.
- Analysis of IC50 values, cell cycle distribution, and DNA damage induction for promising compounds.
- Characterization of ascaridol's mechanism, including reactive oxygen species (ROS) generation and 8-oxodG induction.
Main Results:
- Ascaridol exhibited >1000-fold selectivity, killing NER-deficient cells at significantly lower concentrations than normal cells.
- Ascaridol treatment induced G2/M-phase arrest, subG1 cell increase, and substantial DNA damage in NER-deficient cells.
- Ascaridol generated ROS and specifically increased 8-oxodG DNA damage sites in NER-deficient cells.
Conclusions:
- Ascaridol is a potent cytotoxic agent that selectively targets cancer cells with nucleotide excision repair deficiencies.
- Its mechanism involves inducing oxidative DNA damage and overwhelming repair pathways.
- Ascaridol represents a potential therapeutic candidate for cancers with specific DNA repair mutations.
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