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Updated: May 25, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Processing of anthracycline-DNA adducts via DNA replication and interstrand crosslink repair pathways
R A Bilardi1, K-I Kimura, D R Phillips
1Department of Biochemistry, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, Victoria 3086, Australia.
Abstract:
Anthracycline chemotherapeutics are well characterised as poisons of topoisomerase II, however many anthracyclines, including doxorubicin, are also capable of forming drug-DNA adducts. Anthracycline-DNA adducts present an unusual obstacle for cells as they are covalently attached to one DNA strand and stabilised by hydrogen bonding to the other strand. We now show that in cycling cells processing of anthracycline adducts through DNA replication appears dominant compared to processing via transcription-coupled pathways, and that the processing of these adducts into DNA breaks is independent of topoisomerase II. It has previously been shown that cells deficient in homologous recombination (HR) are hypersensitive to adduct forming treatments. Given that anthracycline-DNA adducts, whilst not true crosslinks, are associated with both DNA strands, the role of ICL repair pathways was investigated. Mus81 is a structure specific nuclease implicated in Holliday junction resolution and the resolution of branched DNA formed by stalled replication forks. We now show that ICL repair deficient cells (Mus81(-/-)) are hypersensitive to anthracycline-DNA adducts and ET-743, a compound which causes a chemically similar type of DNA damage. Further analysis of this mechanism showed that Mus81 does not appear to cause DNA breaks resulting from either anthracycline- or ET743-DNA adducts. This suggests Mus81 processes these novel forms of DNA damage in a fundamentally different way compared to the processing of classical covalent crosslinks. Improved understanding of the role of DNA repair in response to such adducts may lead to more effective chemotherapy for patients with BRCA1/2 mutations and other HR deficiencies.
Insights
Anthracycline chemotherapeutics form DNA adducts processed during replication, not by topoisomerase II. Cells deficient in ICL repair, like Mus81(-/-), show hypersensitivity to these adducts, suggesting novel DNA damage processing mechanisms.
Area of Science:
- Molecular Biology
- Genetics
- Cancer Research
Background:
- Anthracyclines, like doxorubicin, are topoisomerase II inhibitors but also form DNA adducts.
- These adducts covalently bind one DNA strand and stabilize via hydrogen bonds to the other.
- Cells deficient in homologous recombination (HR) exhibit hypersensitivity to DNA adduct-forming agents.
Purpose of the Study:
- To investigate the cellular processing of anthracycline-DNA adducts.
- To determine the role of topoisomerase II and ICL repair pathways in processing these adducts.
- To explore the potential therapeutic implications for HR-deficient cancers.
Main Methods:
- Studied DNA adduct processing in cycling cells, comparing replication and transcription-coupled pathways.
- Assessed the role of topoisomerase II in adduct-induced DNA breaks.
- Investigated the sensitivity of ICL repair-deficient cells (Mus81(-/-)) to anthracycline and ET-743 adducts.
- Analyzed the mechanism of Mus81 in processing these DNA damages.
Main Results:
- DNA replication is the dominant pathway for processing anthracycline adducts in cycling cells.
- Adduct processing into DNA breaks is independent of topoisomerase II.
- Mus81(-/-) cells are hypersensitive to anthracycline-DNA adducts and ET-743.
- Mus81 does not appear to induce DNA breaks from these adducts, indicating distinct processing compared to crosslinks.
Conclusions:
- Anthracycline-DNA adducts are primarily processed via replication, independent of topoisomerase II.
- Mus81 plays a role in repairing these adducts, but distinct from its role in classical crosslink repair.
- Understanding these repair pathways could inform chemotherapy strategies for HR-deficient cancers, including those with BRCA1/2 mutations.
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