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Updated: May 23, 2026

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A Guide to Structured Illumination TIRF Microscopy at High Speed with Multiple Colors
Published on: May 30, 2016
Time-lapse two-color 3D imaging of live cells with doubled resolution using structured illumination
Reto Fiolka1, Lin Shao, E Hesper Rego
1Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, VA 20147, USA. fiolkar@janelia.hhmi.org
Summary
This study introduces a novel structured-illumination microscopy (SIM) setup enabling fast, multicolor live-cell imaging. The new system achieves high-speed 3D imaging, overcoming previous limitations for observing dynamic biological processes in living cells.
Area of Science:
- Biophysics
- Cell Biology
- Microscopy
Background:
- Structured-illumination microscopy (SIM) offers super-resolution but often lacks speed and multicolor capabilities for live-cell imaging.
- Previous SIM implementations were too slow or single-color, limiting their utility for dynamic cellular processes.
- SIM's wide-field nature, light efficiency, and independence from field of view size make it ideal for live-cell imaging.
Purpose of the Study:
- To develop a novel SIM setup capable of fast, 3D, multicolor live-cell imaging.
- To overcome the speed and multicolor limitations of existing SIM techniques.
- To enable high-speed acquisition of dynamic biological events in living cells.
Main Methods:
- Developed a new SIM setup utilizing rapidly programmable liquid crystal devices.
- Implemented a flexible 2D grid pattern algorithm for rapid switching between excitation wavelengths.
- Achieved high volume acquisition rates for both single-color and two-color 3D datasets.
Main Results:
- Demonstrated a SIM setup capable of recording 3D two-color datasets of living whole cells at unprecedented speeds.
- Achieved volume rates of 4 seconds (one color) and 8.5 seconds (two colors) over multiple time points.
- Successfully imaged various cellular structures, including mitochondria, clathrin-coated vesicles, and the actin cytoskeleton.
Conclusions:
- The developed SIM microscope significantly advances live-cell imaging capabilities by enabling fast, multicolor super-resolution.
- This technology overcomes previous limitations, allowing for detailed observation of dynamic biological processes in 3D.
- The system is versatile and applicable to diverse biological samples, including cultured neurons and HeLa cells.
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