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Updated: May 23, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
ATM-dependent phosphorylation of the checkpoint clamp regulates repair pathways and maintains genomic stability
Min Hwa Shin1, Ming Yuan, Hao Zhang
1Department of Radiation Oncology and Molecular Radiation Sciences, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Abstract:
Upon genotoxic stress and during normal S phase, ATM phosphorylates the checkpoint clamp protein Rad9 in a manner that depends on Ser272. Ser272 is the only known ATM-dependent phosphorylation site in human Rad9. However, Ser272 phosphorylation is not required for survival or checkpoint activation after DNA damage. The physiological function of Ser272 remains elusive. Here, we show that ATM-dependent Rad9(Ser272) phosphorylation requires the MRN complex and controls repair pathways. Furthermore, the mutant cells accumulate large numbers of chromosome breaks and induce gross chromosomal rearrangements. Our findings establish a new and unexpected role for ATM: it phosphorylates the checkpoint clamp in order to control repair pathways, thereby maintaining genomic integrity during unperturbed cell cycle and upon DNA damage.
Insights
ATM phosphorylates Rad9 at Ser272, a process crucial for DNA repair and maintaining genomic integrity. This phosphorylation is vital for controlling repair pathways, preventing chromosome breaks and rearrangements.
Area of Science:
- Cellular biology
- Molecular genetics
- DNA repair mechanisms
Background:
- ATM (Ataxia-telangiectasia mutated) is a key kinase involved in DNA damage response.
- Rad9 is a checkpoint clamp protein essential for cell cycle control.
- ATM-dependent phosphorylation of Rad9 at Ser272 was previously identified but its function remained unclear.
Purpose of the Study:
- To elucidate the physiological function of ATM-dependent Rad9 phosphorylation at Ser272.
- To investigate the role of Rad9(Ser272) phosphorylation in DNA repair and genomic stability.
Main Methods:
- Utilized cell-based assays to study ATM-Rad9 interactions and phosphorylation.
- Employed genetic mutations to assess the impact of Rad9(Ser272) phosphorylation on DNA repair.
- Investigated the requirement of the MRN complex in ATM-mediated Rad9 phosphorylation.
Main Results:
- ATM-dependent Rad9(Ser272) phosphorylation requires the MRN complex.
- Cells lacking functional Rad9(Ser272) phosphorylation accumulate chromosome breaks.
- Mutant cells exhibit increased gross chromosomal rearrangements, indicating genomic instability.
Conclusions:
- ATM-dependent Rad9(Ser272) phosphorylation plays a critical role in controlling DNA repair pathways.
- This phosphorylation is essential for maintaining genomic integrity during both normal cell cycling and in response to DNA damage.
- Findings reveal a novel function for ATM in regulating repair pathways through Rad9 phosphorylation.
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