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Updated: May 23, 2026

Immunofluorescence Imaging of DNA Damage and Repair Foci in Human Colon Cancer Cells
Published on: June 9, 2020
PCNA-dependent accumulation of CDKN1A into nuclear foci after ionizing irradiation
Claudia Wiese1, Jeanette Heede Rudolph, Burkhard Jakob
1Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA. CWiese@lbl.gov
Abstract:
The cyclin-dependent kinase inhibitor CDKN1A/p21 confers cell-cycle arrest in response to DNA damage and inhibits DNA replication through its direct interaction with the proliferating cell nuclear antigen (PCNA) and cyclin/cyclin-dependent kinase complexes. Previously, we reported that in response to densely ionizing radiation CDKN1A rapidly is recruited to the sites of particle traversal, and that CDKN1A foci formation in response to heavy ions is independent of its transactivation by TP53. Here, we show that exposure of normal human fibroblasts to X-rays or to H2O2 also induces nuclear accumulations of CDKN1A. We find that CDKN1A foci formation in response to radiation damage is dependent on its dephosphorylation and on its direct physical interaction with PCNA. Live cell imaging analyses of ectopically expressed EGFP-CDKN1A and dsRed-PCNA show rapid recruitment of both proteins into foci after radiation damage. Detailed dynamic measurements reveal a slightly delayed recruitment of CDKN1A compared to PCNA, which is best described by bi-exponential curve fitting, taking the preceding binding of PCNA to DNA into account. We propose a regulatory role for CDKN1A in mediating PCNA function after radiation damage, and provide evidence that this role is distinct from its involvement in nucleotide excision repair and unrelated to double-strand break repair.
Insights
Cyclin-dependent kinase inhibitor CDKN1A/p21 forms foci after DNA damage, interacting with PCNA. This interaction, crucial for cell-cycle arrest, is independent of double-strand break repair pathways.
Area of Science:
- Molecular Biology
- Cell Biology
- Radiation Biology
Background:
- CDKN1A/p21 is a cell-cycle inhibitor crucial for DNA damage response.
- CDKN1A/p21 interacts with PCNA to inhibit DNA replication.
- Previous studies showed CDKN1A/p21 foci formation after ionizing radiation, independent of TP53.
Purpose of the Study:
- To investigate CDKN1A/p21 foci formation in response to X-rays and H2O2.
- To elucidate the mechanisms and dynamics of CDKN1A/p21 recruitment to damage sites.
- To determine the role of CDKN1A/p21-PCNA interaction in DNA damage response.
Main Methods:
- Exposure of human fibroblasts to X-rays and H2O2.
- Analysis of CDKN1A/p21 foci formation and dephosphorylation.
- Live cell imaging of EGFP-CDKN1A and dsRed-PCNA.
- Bi-exponential curve fitting for dynamic measurements.
Main Results:
- X-rays and H2O2 induce nuclear CDKN1A/p21 accumulations.
- CDKN1A/p21 foci formation depends on dephosphorylation and PCNA interaction.
- Live imaging shows rapid, yet slightly delayed, recruitment of CDKN1A/p21 relative to PCNA.
- PCNA binding to DNA precedes CDKN1A/p21 recruitment.
Conclusions:
- CDKN1A/p21 plays a regulatory role in PCNA function post-radiation.
- This role is distinct from nucleotide excision repair and double-strand break repair.
- CDKN1A/p21-PCNA interaction is a key mechanism in cellular response to DNA damage.
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