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Updated: May 23, 2026

Rapid, Seamless Generation of Recombinant Poxviruses using Host Range and Visual Selection
Published on: May 24, 2020
Virus variants with differences in the P1 protein coexist in a Plum pox virus population and display particular
Varvara I Maliogka1, Beatriz Salvador, Alberto Carbonell
1Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, Campus Universidad Autónoma de Madrid, 28049 Madrid, Spain.
Abstract:
Subisolates segregated from an M-type Plum pox virus (PPV) isolate, PPV-PS, differ widely in pathogenicity despite their high degree of sequence similarity. A single amino acid substitution, K109E, in the helper component proteinase (HCPro) protein of PPV caused a significant enhancement of symptom severity in herbaceous hosts, and notably modified virus infectivity in peach seedlings. The presence of this substitution in certain subisolates that induced mild symptoms in herbaceous hosts and did not infect peach seedlings suggested the existence of uncharacterized attenuating factors in these subisolates. In this study, we show that two amino acid changes in the P1 protein are specifically associated with the mild pathogenicity exhibited by some PS subisolates. Site-directed mutagenesis studies demonstrated that both substitutions, W29R and V139E, but especially W29R, resulted in lower levels of virus accumulation and symptom severity in a woody host, Prunus persica. Furthermore, when W29R and V139E mutations were expressed concomitantly, PPV infectivity was completely abolished in this host. In contrast, the V139E substitution, but not W29R, was found to be responsible for symptom attenuation in herbaceous hosts. Deep sequencing analysis demonstrated that the W29R and V139E heterogeneities already existed in the original PPV-PS isolate before its segregation in different subisolates by local lesion cloning. These results highlight the potential complexity of potyviral populations and the relevance of the P1 protein of potyviruses in pathogenesis and viral adaptation to the host.
Insights
Two amino acid changes in the P1 protein of Plum pox virus (PPV) significantly reduce its pathogenicity in woody hosts. These mutations, W29R and V139E, also influence symptom severity in herbaceous plants, highlighting P1 protein
Area of Science:
- Plant virology
- Molecular plant pathology
- Potyviridae family
Background:
- Plum pox virus (PPV) M-type isolates exhibit variable pathogenicity despite high sequence similarity.
- A K109E substitution in the HCPro protein enhances PPV symptom severity and modifies infectivity in peach seedlings.
- Mild PPV subisolates suggested the presence of unknown attenuating factors.
Purpose of the Study:
- Investigate the role of P1 protein amino acid substitutions in PPV pathogenicity.
- Determine the impact of specific P1 mutations on virus accumulation and symptom development in herbaceous and woody hosts.
- Analyze the presence of these mutations in the original PPV-PS isolate.
Main Methods:
- Site-directed mutagenesis to introduce W29R and V139E substitutions in the P1 protein.
- Inoculation of herbaceous and woody hosts (Prunus persica) with mutated PPV.
- Assessment of virus accumulation and symptom severity.
- Deep sequencing of the original PPV-PS isolate.
Main Results:
- W29R and V139E substitutions in P1 reduce virus accumulation and symptom severity in Prunus persica.
- Concomitant W29R and V139E mutations abolish PPV infectivity in Prunus persica.
- V139E substitution, but not W29R, attenuates symptoms in herbaceous hosts.
- Deep sequencing revealed W29R and V139E heterogeneities in the original PPV-PS isolate.
Conclusions:
- The P1 protein plays a crucial role in potyviral pathogenesis and host adaptation.
- Specific amino acid substitutions in P1 modulate PPV pathogenicity in a host-dependent manner.
- Viral populations exhibit complexity with pre-existing heterogeneities influencing pathogenicity.
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