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Related Experiment Video

Updated: May 22, 2026

A Web Tool for Generating High Quality Machine-readable Biological Pathways
08:01

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

graph2tab, a library to convert experimental workflow graphs into tabular formats.

Marco Brandizi1, Natalja Kurbatova, Ugis Sarkans

  • 1European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK. brandizi@ebi.ac.uk

Bioinformatics (Oxford, England)
|May 5, 2012
PubMed
Summary
This summary is machine-generated.

We developed graph2tab, a novel library for converting experimental workflow graphs into size-optimized tables. This solution aids biomedical researchers in efficiently reporting experimental data in popular spreadsheet formats.

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Area of Science:

  • Biomedical Informatics
  • Data Management

Background:

  • Spreadsheet-like tabular formats are increasingly used for experimental reporting in the biomedical field.
  • Converting experimental workflow graphs into table-based representations is a significant challenge.

Purpose of the Study:

  • To introduce graph2tab, a library designed for efficient graph-to-table conversion.
  • To provide a generic and adaptable solution for data representation.

Main Methods:

  • Implementation of conversion algorithms within the graph2tab library.
  • Focus on size-optimized representation of experimental workflows.

Main Results:

  • graph2tab enables size-optimized conversion of experimental workflow graphs into tabular formats.
  • The library offers a generic solution adaptable to various data export and conversion needs.

Conclusions:

  • graph2tab facilitates streamlined data reporting in biomedical research.
  • The library supports the growing trend of using tabular formats for experimental data.