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Definite integrals involving the product of two functions over a fixed interval can be evaluated using integration by parts. This method rewrites the integral as the difference of a product evaluated at the endpoints and a remaining definite integral that is often simpler to compute.A representative example is the definite integral of the inverse tangent function. Since there is no direct integration formula for arctan ⁡x, the integrand is rewritten as a product of arctan⁡ x and the...
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Tavaxy: integrating Taverna and Galaxy workflows with cloud computing support.

Mohamed Abouelhoda1, Shadi Alaa Issa, Moustafa Ghanem

  • 1Center for Informatics Sciences, Nile University, Giza, Egypt. mabouelhoda@yahoo.com

BMC Bioinformatics
|May 8, 2012
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Summary
This summary is machine-generated.

Tavaxy integrates Taverna and Galaxy workflows, simplifying bioinformatics application development with reusable patterns and cloud computing. This enhances workflow sharing and reduces redundant development efforts for complex analyses.

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Area of Science:

  • Bioinformatics
  • Computational Biology
  • Workflow Systems

Background:

  • Workflow systems like Taverna and Galaxy are crucial for bioinformatics applications but lack interoperability.
  • Differences in computation models and languages hinder workflow sharing and increase development duplication.

Purpose of the Study:

  • To present Tavaxy, a novel system addressing the interoperability gap between Taverna and Galaxy.
  • To simplify and enhance the development of bioinformatics applications, particularly sequence analysis.

Main Methods:

  • Developed Tavaxy as a stand-alone system utilizing extensible, reusable workflow patterns.
  • Enabled seamless integration of Taverna and Galaxy workflows at design and run-time.
  • Incorporated flexible cloud computing capabilities for scalable analysis.

Main Results:

  • Tavaxy allows integration of existing Taverna and Galaxy workflows within a single environment.
  • The system supports hierarchical workflows and workflow patterns for simplified creation.
  • Flexible cloud computing options are provided for users to manage computational resources.

Conclusions:

  • Tavaxy reduces workflow development time through pattern-based simplification and integration.
  • It facilitates the creation of hybrid workflows by reusing components from Taverna and Galaxy.
  • The system leverages cloud computing to handle large-scale bioinformatics data analysis.