MTORC1 functions as a transcriptional regulator of autophagy by preventing nuclear transport of TFEB
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Updated: May 22, 2026

Reconstitution of Msp1 Extraction Activity with Fully Purified Components
Published on: August 10, 2021
Jose A Martina1, Yong Chen, Marjan Gucek
1Laboratory of Cell Biology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD USA.
Abstract:
The mammalian target of rapamycin (MTOR) protein kinase complex is a key component of a pathway that regulates cell growth and proliferation in response to energy levels, hypoxia, nutrients and insulin. Inhibition of MTORC1 strongly induces autophagy by regulating the activity of the ULK protein kinase complex that is required for the formation of autophagosomes. However, the participation of MTORC1 in the expression of autophagy genes has not been characterized. Here we show that MTORC1 regulates nuclear localization and activity of the transcription factor EB (TFEB), a member of the bHLH leucine-zipper family of transcription factors that drives expression of autophagy and lysosomal genes. Under normal nutrient conditions, TFEB is phosphorylated in Ser211 in an MTORC1-dependent manner. This phosphorylation promotes association of TFEB with members of the YWHA (14-3-3) family of proteins and retention of the transcription factor in the cytosol. Pharmacological or genetic inhibition of MTORC1 causes dissociation of the TFEB/YWHA complex and rapid transport of TFEB to the nucleus where it increases transcription of multiple genes implicated in autophagy and lysosomal function. Active TFEB also associates with late endosomal/lysosomal membranes through interaction with the LAMTOR/RRAG/MTORC1 complex. Our results unveil a novel role for MTORC1 in the maintenance of cellular homeostasis by regulating autophagy at the transcriptional level.
Insights
Mammalian target of rapamycin complex 1 (MTORC1) controls autophagy gene expression by regulating the nuclear entry of transcription factor EB (TFEB). MTORC1 inhibition promotes TFEB nuclear translocation, boosting autophagy and lysosomal gene transcription for cellular homeostasis.
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- The mammalian target of rapamycin (MTOR) pathway regulates cell growth and proliferation.
- MTOR complex 1 (MTORC1) inhibition induces autophagy, a cellular degradation process, by affecting the ULK protein kinase complex.
- The role of MTORC1 in regulating the expression of autophagy-related genes remains unclear.
Purpose of the Study:
- To investigate the role of MTORC1 in the transcriptional regulation of autophagy and lysosomal genes.
- To elucidate the mechanism by which MTORC1 influences the activity of transcription factor EB (TFEB).
Main Methods:
- Utilized pharmacological and genetic inhibition of MTORC1.
- Assessed TFEB phosphorylation, cytosol-to-nucleus translocation, and association with YWHA (14-3-3) proteins.
- Analyzed TFEB's transcriptional activity on autophagy and lysosomal genes.
- Investigated TFEB interaction with the LAMTOR/RRAG/MTORC1 complex on endosomal membranes.
Main Results:
- MTORC1 directly regulates the nuclear localization and activity of transcription factor EB (TFEB).
- Under nutrient-rich conditions, MTORC1 phosphorylates TFEB at Ser211, promoting its cytosolic retention via YWHA (14-3-3) binding.
- Inhibition of MTORC1 leads to TFEB dephosphorylation, dissociation from YWHA, and translocation to the nucleus.
- Nuclear TFEB enhances the transcription of genes involved in autophagy and lysosomal function, and associates with late endosomal/lysosomal membranes.
Conclusions:
- MTORC1 plays a novel role in maintaining cellular homeostasis by transcriptionally controlling autophagy.
- The MTORC1-TFEB axis represents a critical regulatory mechanism linking nutrient status to the expression of autophagy and lysosomal genes.
- This finding provides new insights into the regulation of cellular catabolic processes.
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