Related Experiment Video
Updated: May 22, 2026

A Guide to Structured Illumination TIRF Microscopy at High Speed with Multiple Colors
Published on: May 30, 2016
Resolution doubling in live, multicellular organisms via multifocal structured illumination microscopy
Andrew G York1, Sapun H Parekh, Damian Dalle Nogare
1Section on High Resolution Optical Imaging, National Institute of Biomedical Imaging and Bioengineering, US National Institutes of Health (NIH), Bethesda, Maryland, USA. andrew.g.york+naturemethods@gmail.com
This study presents a new 3D super-resolution microscopy technique for live organisms. It enables deeper, faster imaging of cellular structures with unprecedented resolution, advancing biological research.
Area of Science:
- Biophysics
- Cell Biology
- Microscopy
Background:
- Structured illumination microscopy (SIM) is a super-resolution technique.
- Existing SIM methods have limitations in imaging depth and speed for live multicellular organisms.
Purpose of the Study:
- To develop a 3D super-resolution imaging method for live multicellular organisms.
- To overcome limitations in imaging depth and speed of conventional SIM.
Main Methods:
- Utilized structured illumination microscopy (SIM) with sparse multifocal illumination patterns generated by a digital micromirror device (DMD).
- Physically rejected out-of-focus light to achieve 3D subdiffractive imaging.
- Achieved imaging speeds of one 2D image per second with resolutions of 145 nm laterally and 400 nm axially.
Main Results:
- Enabled 3D super-resolution imaging in samples eightfold thicker than previously possible with SIM.
- Successfully imaged GFP-labeled microtubules in live zebrafish embryos at depths greater than 45 micrometers.
- Captured dynamic cellular processes, including interactions between myosin IIA and F-actin, in 4D super-resolution without apparent phototoxicity.
Conclusions:
- The developed method provides a simpler, more accessible approach to 3D super-resolution microscopy.
- This technique facilitates advanced imaging of live biological systems, opening new avenues for research.
- The method is compatible with commercially available components and open-source software, promoting wider adoption.
Related Concept Videos
Super-resolution Fluorescence Microscopy
Three-Dimensional Microscopy in Microbiology
Confocal Fluorescence Microscopy

