Related Experiment Video
Updated: May 22, 2026

10:29
Multi-photon Intracellular Sodium Imaging Combined with UV-mediated Focal Uncaging of Glutamate in CA1 Pyramidal Neurons
Published on: October 8, 2014
2-Amino-3-chloro-5-nitro-benzamide
Summary
This study reveals the molecular structure of a chlorinated nitroaniline derivative, highlighting significant twisting of its amide group and the formation of intra-molecular and inter-molecular hydrogen bonds in its crystal lattice.
Area of Science:
- Crystallography
- Organic Chemistry
- Molecular Structure
Background:
- Understanding the three-dimensional arrangement of atoms in organic molecules is crucial for predicting their chemical behavior and physical properties.
- The presence of amide and nitro groups on a benzene ring can influence molecular conformation and intermolecular interactions.
- Hydrogen bonding plays a significant role in the self-assembly and properties of crystalline solids.
Purpose of the Study:
- To elucidate the detailed molecular structure of the title compound, C(7)H(6)ClN(3)O(3).
- To investigate the conformational preferences of the amide and nitro groups relative to the benzene ring.
- To identify and characterize intra-molecular and inter-molecular hydrogen bonding interactions within the crystal structure.
Main Methods:
- Single-crystal X-ray diffraction analysis was employed to determine the precise atomic coordinates and bond parameters.
- Analysis of bond lengths, bond angles, and torsion angles provided insights into the molecular geometry.
- Intermolecular interactions, specifically hydrogen bonds, were identified using geometric criteria.
Main Results:
- The amide group is significantly twisted out of the plane of the benzene ring, with a C-C-C-O torsion angle of 34.2(5)°.
- The nitro group is nearly co-planar with the benzene ring, exhibiting an O-N-C-C torsion angle of 4.0(5)°.
- Intra-molecular hydrogen bonds of the N-H⋯O and N-H⋯Cl types were observed.
- In the crystal lattice, molecules are interconnected by N-H⋯O hydrogen bonds, forming layered structures propagating in the ab plane.
Conclusions:
- The molecular conformation is characterized by a pronounced deviation of the amide group from planarity, while the nitro group remains largely planar.
- Intra-molecular hydrogen bonding contributes to the stabilization of the observed molecular conformation.
- Intermolecular N-H⋯O hydrogen bonds dictate the formation of extended layered networks in the solid state, influencing crystal packing.
Related Concept Videos
Electrophilic Aromatic Substitution: Nitration of Benzene
The nitration of benzene is an example of an electrophilic aromatic substitution reaction. It involves the formation of a very powerful electrophile, the nitronium ion, which is linear in shape. The reaction occurs through the interaction of two strong acids, sulfuric and nitric acid.
Physical Properties of Amines
Amines with low molecular weight are usually gaseous at room temperature, while those with high molecular weight are liquid or solids in nature. Usually, low molecular weight amines have a rotten fish-like smell. Diamines typically have a pungent smell. For instance, cadaverine and putrescine, depicted in Figure 1, are two molecules responsible for decaying tissue.
Preparation of 1° Amines: Gabriel Synthesis
Direct alkylation is not a suitable method for synthesizing amines because it produces polyalkylated products. Gabriel synthesis is the most preferred method to exclusively make primary amines. The method uses phthalimide, which contains a protected form of nitrogen that participates in alkylation only once to predominantly give primary amines.
Strong bases like NaOH or KOH deprotonate the phthalimide to form the corresponding anion, which acts as a nucleophile. Further, the anion attacks an...
Strong bases like NaOH or KOH deprotonate the phthalimide to form the corresponding anion, which acts as a nucleophile. Further, the anion attacks an...
Chemotherapy-Induced Nausea and Vomiting: Dopamine Receptor Antagonists
Dopamine receptor antagonists, also known as antipsychotic agents, are critical in managing chemotherapy-induced vomiting. These antiemetic agents block dopamine receptors in the chemoreceptor trigger zone (CTZ), inhibiting signal transmission to the vomiting center. Antipsychotic agents encompass phenothiazines (PTZ), butyrophenones, benzamides, and thienobenzodiazepines (Zyprexa), which are utilized for their antiemetic and sedative properties.
Phenothiazines, such as prochlorperazine...
Phenothiazines, such as prochlorperazine...
Diazonium Group Substitution: –OH and –H
Nitrous acid, a weak acid, is prepared in situ via the reaction of sodium nitrite with a strong acid under cold conditions. This nitrous acid prepared in situ reacts with primary arylamines to form arenediazonium salts. Such reactions are known as diazotization reactions. As shown in Figure 1, the formation of arenediazonium salts begins with the decomposition of nitrous acid in an acidic solution to give nitrosonium ions.
Structure of Amines
The hybridized nitrogen atom in amines possesses a lone pair of electrons and is bound to three substituents with a bond angle of around 108°, which is less than the tetrahedral angle of 109.5°. However, the C–N–H bond angle is slightly larger at 112°, with a carbon–nitrogen bond length of 147 pm. This carbon–nitrogen bond length of of amines is longer than the carbon–oxygen bond of alcohols (143 pm) but shorter than alkanes’ carbon–carbon bond (154 pm). These aspects are illustrated in Figure...

