miRSeqNovel: an R based workflow for analyzing miRNA sequencing data
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mirMachine: A One-Stop Shop for Plant miRNA Annotation
Published on: May 1, 2021
Kui Qian1, Eeva Auvinen, Dario Greco
1DNA Sequencing and Genomics Laboratory, Institute of Biotechnology, University of Helsinki, Helsinki, Finland. kui.qian@helsinki.fi
Molecular and Cellular Probes
|May 22, 2012
Abstract:
We present miRSeqNovel, an R based workflow for miRNA sequencing data analysis. miRSeqNovel can process both colorspace (SOLiD) and basespace (Illumina/Solexa) data by different mapping algorithms. It finds differentially expressed miRNAs and gives conservative prediction of novel miRNA candidates with customized parameters. miRSeqNovel is freely available at http://sourceforge.net/projects/mirseq/files.
