Antibiotic resistance and cagA gene correlation: a looming crisis of Helicobacter pylori
Related Experiment Video
Updated: May 22, 2026

Gastric Mucosa Quantitative Polymerase Chain Reaction Analysis for Detecting Helicobacter pylori and Antibiotic Resistance
Published on: March 7, 2025
Adnan Khan1, Amber Farooqui, Hamid Manzoor
1Immunology and Infectious Diseases Research Laboratory, Department of Microbiology, University of Karachi, University Road, Karachi 75270, Pakistan. adnankh@uok.edu.pk
Aim:
To determine antibiotic resistance of Helicobacter pylori (H. pylori) in Pakistan and its correlation with host and pathogen associated factors.
Methods:
A total of 178 strains of H. pylori were isolated from gastric biopsies of dyspeptic patients. Susceptibility patterns against first and second-line antibiotics were determined and trends of resistance were analyzed in relation to the sampling period, gastric conditions and cagA gene carriage. The effect of cagA gene on the acquisition of resistance was investigated by mutant selection assay.
Results:
The observations showed that monoresistant strains were prevalent with rates of 89% for metronidazole, 36% for clarithromycin, 37% for amoxicillin, 18.5% for ofloxacin and 12% for tetracycline. Furthermore, clarithromycin resistance was on the rise from 2005 to 2008 (32% vs 38%, P = 0.004) and it is significantly observed in non ulcerative dyspeptic patients compared to gastritis, gastric ulcer and duodenal ulcer cases (53% vs 20%, 18% and 19%, P = 0.000). On the contrary, metronidazole and ofloxacin resistance were more common in gastritis and gastric ulcer cases. Distribution analysis and frequencies of resistant mutants in vitro correlated with the absence of cagA gene with metronidazole and ofloxacin resistance.
Conclusion:
The study confirms the alarming levels of antibiotic resistance associated with the degree of gastric inflammation and cagA gene carriage in H. pylori strains.
Insights
Antibiotic resistance in Helicobacter pylori is alarmingly high in Pakistan, particularly for metronidazole and clarithromycin. Resistance correlates with gastric inflammation and the absence of the cagA gene, impacting treatment effectiveness.
Area of Science:
- Microbiology
- Infectious Diseases
- Gastroenterology
Background:
- Helicobacter pylori (H. pylori) infection is a major cause of gastric diseases worldwide.
- Antibiotic resistance in H. pylori poses a significant challenge to effective treatment and eradication therapies.
- Understanding resistance patterns and associated factors is crucial for optimizing H. pylori management in Pakistan.
Purpose of the Study:
- To determine the antibiotic resistance profiles of H. pylori strains isolated from dyspeptic patients in Pakistan.
- To investigate the correlation between H. pylori antibiotic resistance and host/pathogen factors, including gastric conditions and cagA gene carriage.
Main Methods:
- Isolation and susceptibility testing of 178 H. pylori strains from gastric biopsies.
- Analysis of resistance trends over time (2005-2008) and in relation to gastric conditions.
- Investigation of the cagA gene's effect on antibiotic resistance using mutant selection assays.
Main Results:
- High rates of monoresistance were observed: metronidazole (89%), clarithromycin (36%), amoxicillin (37%), ofloxacin (18.5%), and tetracycline (12%).
- Clarithromycin resistance increased significantly from 2005 to 2008 and was higher in non-ulcerative dyspepsia.
- Metronidazole and ofloxacin resistance were more prevalent in gastritis and gastric ulcer cases, correlating with the absence of the cagA gene.
Conclusions:
- The study highlights alarming levels of antibiotic resistance in H. pylori in Pakistan.
- Gastric inflammation severity and cagA gene carriage are significantly associated with H. pylori antibiotic resistance.
- These findings underscore the need for updated treatment guidelines and surveillance of resistance patterns.
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