Related Experiment Video
Updated: May 21, 2026

Analyzing Protein Dynamics Using Hydrogen Exchange Mass Spectrometry
Published on: November 29, 2013
Hydrogen exchange equilibria in thiols.
Dustin Hofstetter1, Basil Thalmann, Thomas Nauser
1Department of Chemistry and Applied Biosciences, Institute of Inorganic Chemistry, ETH Zurich, 8093 Zürich, Switzerland.
Hydrogen-deuterium exchange in peptides like glutathione was studied using NMR. Radical reactions reveal pH-dependent exchange sites and an unexpected thiolactone formation in acidic conditions.
Area of Science:
- Biochemistry
- Chemical Physics
Background:
- Peptides and small molecules undergo hydrogen-deuterium (H-D) exchange.
- Understanding H-D exchange mechanisms is crucial for studying molecular structure and dynamics.
- Radical-mediated reactions offer a pathway to probe H-D exchange.
Purpose of the Study:
- To investigate H-D exchange in various peptides including cysteine, cysteinyl-glycine, glutathione (GSH), phenylalanyl-cysteinyl-glycine, and histidyl-cysteinyl-glycine.
- To identify specific sites of H-D exchange under acidic and neutral conditions.
- To explore the influence of pH and molecular structure on radical-mediated H-D exchange.
Main Methods:
- Dissolving peptides in D(2)O (deuterated water) under acidic and neutral conditions.
- Utilizing a radical generator (2,2'-azobis(2-methylpropionamidine) dihydrochloride) and radical mediators (benzyl alcohol, 2-propanol).
- Employing Nuclear Magnetic Resonance (NMR) spectroscopy, including 2D NMR, to monitor H-D exchange and identify exchange sites.
Main Results:
- Significant H-D exchanges were observed in acidic media at specific positions within GSH, Phe-Cys-Gly, and His-Cys-Gly.
- In neutral media, exchanges were noted in Cys-Gly and GSH at distinct sites.
- 2D NMR revealed an unexpected rearrangement in GSH in acidic solution, consistent with thiolactone formation.
Conclusions:
- The sites of radical-mediated H-D exchange are highly dependent on peptide structure and pH.
- Electron density, particularly lone pairs, appears to facilitate the extent of exchange.
- Acidic conditions can induce structural rearrangements, such as thiolactone formation, in peptides containing cysteine and glycine residues.
More Related Videos
10:24Defining Hsp33's Redox-regulated Chaperone Activity and Mapping Conformational Changes on Hsp33 Using Hydrogen-deuterium Exchange Mass Spectrometry
Published on: June 7, 2018
09:18Time-resolved ElectroSpray Ionization Hydrogen-deuterium Exchange Mass Spectrometry for Studying Protein Structure and Dynamics
Published on: April 17, 2017
Related Concept Videos
Preparation and Reactions of Thiols
Structure and Nomenclature of Thiols and Sulfides
Ion Exchange
Preparation and Reactions of Sulfides
Solubility Equilibria: Ionic Product of Water
The ionic product of water varies with temperature, and its value is 1.0 x 10−14 at standard experimental conditions. Per Le Chatelier's...
Strong Acid and Base Solutions