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Updated: May 20, 2026

Atomic Force Microscopy Investigations of DNA Lesion Recognition in Nucleotide Excision Repair
Published on: May 24, 2017
DNA damage by C1027 involves hydrogen atom abstraction and addition to nucleobases
Joanna Maria N San Pedro1, Terry A Beerman, Marc M Greenberg
1Department of Chemistry, Johns Hopkins University, 3400 N. Charles St., Baltimore, MD 21218, United States.
The antitumor drug C1027 causes DNA damage, including double strand breaks and interstrand cross-links (ICLs). Its reactivity varies with DNA sequence, and ICLs form through unique reactions involving deoxyribose and nucleobases.
Area of Science:
- Molecular Biology
- Drug Discovery
- Genetics
Background:
- C1027 is a potent antitumor agent known to induce DNA damage.
- It uniquely triggers ATM and ATR independent DNA damage responses via double strand breaks and interstrand cross-links (ICLs).
- The precise mechanisms and DNA sequence-dependent reactivity of C1027-induced ICLs are not fully understood.
Purpose of the Study:
- To investigate the impact of DNA sequence on the reactivity of the antitumor agent C1027.
- To characterize the chemical stability and formation mechanisms of C1027-induced interstrand cross-links (ICLs).
Main Methods:
- Experimental analysis of C1027's interaction with various DNA sequences.
- Chemical stability assays for C1027-induced interstrand cross-links (ICLs).
Main Results:
- C1027 exhibits more diverse DNA sequence reactivity than previously recognized.
- Analysis indicates that ICLs result from a dual mechanism: reaction with deoxyribose on one strand and direct addition to a nucleobase on the opposite strand.
- These findings shed light on the less-characterized ICL damage response.
Conclusions:
- The DNA sequence significantly influences C1027's reactivity and the resulting DNA damage.
- C1027-induced ICLs are formed through a novel combination of reactions, contributing to its potent antitumor activity.
- Further understanding of these mechanisms can inform the development of novel DNA-damaging chemotherapeutics.
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